Wall clock time and date at job start Mon Mar 30 2020 01:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47429 * 269.98258 * 7 6 5 9 9 H 1.08007 * 119.99935 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00152 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99807 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99953 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47267 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47223 * 119.99796 * 12 10 8 15 15 H 1.48506 * 109.46819 * 239.99746 * 12 10 8 16 16 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 17 17 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 18 18 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 19 19 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 20 20 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 21 21 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 22 22 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 23 23 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 24 24 H 0.97004 * 119.99524 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 6 1.9311 5.3937 -1.7095 9 1 0.9602 5.1105 -1.3303 10 6 2.0733 6.5519 -2.4438 11 7 3.2554 6.8965 -2.9060 12 14 0.5869 7.6316 -2.7824 13 1 -0.6169 7.0266 -2.1580 14 1 0.8159 8.9826 -2.2101 15 1 0.3803 7.7436 -4.2487 16 7 2.3032 2.1694 -1.0841 17 1 -0.3634 0.5140 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8932 -0.5137 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 3.8763 5.0936 -0.8849 23 1 3.5563 4.1849 -2.3816 24 1 3.3553 7.7112 -3.4229 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234158154.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:39 Heat of formation + Delta-G solvation = 45.002387 kcal Electronic energy + Delta-G solvation = -10537.011411 eV Core-core repulsion = 8453.203557 eV Total energy + Delta-G solvation = -2083.807854 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.71414 -35.66468 -34.12232 -32.69748 -31.08716 -28.38870 -24.61320 -24.01571 -22.23182 -20.21441 -17.43161 -16.65265 -16.22653 -14.93376 -14.40877 -14.12808 -13.17274 -12.75862 -12.49638 -12.23991 -11.56197 -11.42452 -11.08021 -10.98846 -10.78342 -10.64792 -10.27084 -10.08114 -9.80710 -8.90254 -8.62238 -6.25343 -4.30823 2.00177 3.01759 3.22926 3.30687 3.36211 3.83502 4.27814 4.34669 4.73640 5.12591 5.32134 5.34928 5.43840 5.82918 5.97152 6.16426 6.25713 6.63797 6.73978 7.12721 7.20256 7.68578 7.92193 8.69754 8.99544 9.34051 10.85180 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.061248 B = 0.010177 C = 0.009432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.046488 B = 2750.566499 C = 2967.948431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.158 3.842 4 N -0.412 5.412 5 O 0.058 5.942 6 C 0.237 3.763 7 C 0.100 3.900 8 C -0.523 4.523 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.888 5.888 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.280 1.280 16 N -0.509 5.509 17 H 0.062 0.938 18 H 0.065 0.935 19 H 0.056 0.944 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -8.153 3.563 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.116 4.116 4 N -0.126 5.126 5 O 0.004 5.996 6 C 0.019 3.981 7 C 0.061 3.939 8 C -0.562 4.562 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.526 5.526 12 Si 0.734 3.266 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.243 5.243 17 H 0.081 0.919 18 H 0.084 0.916 19 H 0.075 0.925 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.695 -8.588 3.959 9.834 hybrid contribution -0.683 0.795 -0.290 1.088 sum -3.378 -7.793 3.670 9.252 Atomic orbital electron populations 1.21719 0.93845 1.02048 1.02791 1.19776 0.96436 0.86516 1.03775 1.25778 1.00992 1.00127 0.84670 1.74485 1.19952 0.93655 1.24530 1.85239 1.61491 1.26658 1.26202 1.30151 0.90590 0.96517 0.80846 1.18208 0.98452 0.84164 0.93036 1.20839 0.93590 1.06329 1.35410 0.92024 1.24934 0.96574 0.97314 0.94948 1.69937 1.22386 1.24794 1.35444 0.86292 0.82196 0.79987 0.78168 1.19591 1.20601 1.20629 1.71950 1.20724 1.02875 1.28745 0.91894 0.91617 0.92520 0.89152 0.89846 0.92391 0.91334 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 37.16 0.37 -1.49 14 2 C -0.03 -0.37 6.56 -27.88 -0.18 -0.56 14 3 C 0.16 3.11 7.47 -156.37 -1.17 1.94 14 4 N -0.41 -8.68 12.16 30.90 0.38 -8.30 14 5 O 0.06 1.29 11.31 18.11 0.20 1.50 14 6 C 0.24 5.50 7.70 -13.05 -0.10 5.40 14 7 C 0.10 2.49 5.60 -29.04 -0.16 2.33 14 8 C -0.52 -14.21 9.09 -34.44 -0.31 -14.52 14 9 H 0.06 1.70 7.74 -52.48 -0.41 1.29 14 10 C 0.07 1.77 5.46 -17.82 -0.10 1.68 14 11 N -0.89 -24.79 13.29 55.43 0.74 -24.06 14 12 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 14 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 16 N -0.51 -11.43 11.55 -9.87 -0.11 -11.54 14 17 H 0.06 0.88 8.14 -51.93 -0.42 0.46 14 18 H 0.06 0.64 8.14 -51.93 -0.42 0.21 14 19 H 0.06 0.75 8.14 -51.92 -0.42 0.33 14 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 14 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 14 22 H 0.06 1.43 8.14 -51.93 -0.42 1.01 14 23 H 0.07 1.76 8.14 -51.93 -0.42 1.33 14 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 14 LS Contribution 223.99 15.07 3.38 3.38 Total: -1.00 -28.89 223.99 -4.60 -33.49 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -2.50 Total: -5.08 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.66 Total: -5.22 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 1.00 Total: -43.90 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.89 -4.60 -33.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234158154.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.490 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds