Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47126 * 119.99670 * 2 1 3 5 5 H 1.08005 * 120.00021 * 119.99724 * 4 2 1 6 6 C 1.37877 * 120.00330 * 300.00195 * 4 2 1 7 7 N 1.31518 * 120.00076 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47242 * 89.99907 * 8 6 4 10 10 H 1.48501 * 109.46990 * 209.99864 * 8 6 4 11 11 H 1.48499 * 109.47048 * 329.99642 * 8 6 4 12 12 C 1.52996 * 109.47472 * 240.00063 * 2 1 3 13 13 C 1.50703 * 109.47399 * 64.99647 * 12 2 1 14 14 N 1.31134 * 126.54839 * 89.97350 * 13 12 2 15 15 C 1.34490 * 105.61260 * 180.02562 * 14 13 12 16 16 N 1.29938 * 107.42847 * 359.97438 * 15 14 13 17 17 O 1.21303 * 110.25257 * 359.97438 * 16 15 14 18 18 H 1.08993 * 109.46857 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47017 * 300.00134 * 1 2 3 20 20 H 1.09008 * 109.46676 * 59.99972 * 1 2 3 21 21 H 0.97001 * 119.99610 * 180.02562 * 7 6 4 22 22 H 1.09008 * 109.47040 * 305.00260 * 12 2 1 23 23 H 1.09001 * 109.47598 * 185.00375 * 12 2 1 24 24 H 1.08000 * 126.28406 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 6 2.0401 -0.7212 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3347 1.0054 -3.0593 15 6 1.5916 1.4058 -4.1064 16 7 0.5049 0.6935 -4.1074 17 8 0.5141 -0.0880 -3.1797 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 1.9026 -0.5283 4.4376 22 1 1.6054 -1.7198 -1.2951 23 1 3.1264 -0.7995 -1.2055 24 1 1.8510 2.1771 -4.8164 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235088832.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 62.292619 kcal Electronic energy + Delta-G solvation = -10835.784912 eV Core-core repulsion = 8752.726819 eV Total energy + Delta-G solvation = -2083.058093 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -45.23960 -36.00612 -35.12698 -32.52205 -31.11061 -27.23416 -25.19482 -24.04111 -22.26459 -19.86786 -17.77971 -17.37491 -16.60966 -14.91829 -14.87146 -13.86324 -13.68991 -12.91235 -12.40263 -12.13951 -11.82744 -11.55566 -11.15831 -10.78552 -10.63837 -10.40126 -10.07505 -9.69394 -9.32166 -9.16300 -8.63013 -6.15607 -4.17009 1.50112 2.59190 3.23566 3.24440 3.35712 3.37040 4.16241 4.34922 4.50441 5.17210 5.45442 5.78278 5.87689 6.00585 6.21233 6.27074 6.38899 6.54882 6.67438 6.96902 7.31813 7.61329 8.37628 8.46806 8.85523 9.45493 10.96916 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.072314 B = 0.011873 C = 0.011242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.105389 B = 2357.728322 C = 2490.100099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 H 0.036 0.964 4 C -0.518 4.518 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C -0.017 4.017 13 C 0.211 3.789 14 N -0.500 5.500 15 C 0.140 3.860 16 N -0.403 5.403 17 O 0.068 5.932 18 H 0.059 0.941 19 H 0.043 0.957 20 H 0.024 0.976 21 H 0.266 0.734 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 2.428 -10.176 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C -0.056 4.056 13 C -0.008 4.008 14 N -0.234 5.234 15 C -0.154 4.154 16 N -0.113 5.113 17 O 0.012 5.988 18 H 0.078 0.922 19 H 0.061 0.939 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.115 0.885 23 H 0.126 0.874 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.324 2.783 -10.638 11.239 hybrid contribution -0.612 0.924 0.221 1.130 sum -2.936 3.707 -10.417 11.440 Atomic orbital electron populations 1.22268 0.98883 1.01259 0.98639 1.19207 0.92127 0.97037 0.92120 0.94623 1.20839 1.32703 1.13881 0.88112 0.90207 1.24948 0.95533 0.96542 0.95780 1.69879 1.45233 1.40206 0.98008 0.86844 0.80603 0.83748 0.76999 1.20500 1.22388 1.19266 1.20612 1.03080 0.97292 0.84628 1.29662 0.81453 0.93598 0.96070 1.72017 1.30416 1.12686 1.08240 1.27434 0.87958 1.01860 0.98118 1.74600 1.22964 1.06148 1.07593 1.85289 1.38813 1.45403 1.29312 0.92194 0.93883 0.95666 0.92451 0.88523 0.87432 0.76223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.49 37.16 0.32 -2.89 14 2 C 0.02 0.33 1.88 -91.78 -0.17 0.16 14 3 H 0.04 0.84 7.20 -51.93 -0.37 0.46 14 4 C -0.52 -13.57 9.14 -34.44 -0.31 -13.89 14 5 H 0.08 2.21 7.99 -52.48 -0.42 1.79 14 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 14 7 N -0.90 -26.42 13.96 55.43 0.77 -25.65 14 8 Si 0.89 21.54 24.37 -169.99 -4.14 17.40 14 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 14 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 14 11 H -0.27 -6.34 6.53 56.52 0.37 -5.97 14 12 C -0.02 -0.31 5.26 -27.88 -0.15 -0.45 14 13 C 0.21 3.73 6.92 -13.05 -0.09 3.64 14 14 N -0.50 -8.81 11.55 -13.75 -0.16 -8.97 14 15 C 0.14 2.11 13.11 -91.34 -1.20 0.92 14 16 N -0.40 -6.72 12.16 27.67 0.34 -6.39 14 17 O 0.07 1.17 10.76 18.11 0.19 1.37 14 18 H 0.06 1.18 8.14 -51.93 -0.42 0.75 14 19 H 0.04 0.95 3.27 -51.93 -0.17 0.78 14 20 H 0.02 0.48 6.94 -51.92 -0.36 0.12 14 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 22 H 0.10 1.56 8.14 -51.92 -0.42 1.14 14 23 H 0.11 1.87 8.14 -51.93 -0.42 1.44 14 24 H 0.22 2.29 8.06 -52.49 -0.42 1.87 14 LS Contribution 209.73 15.07 3.16 3.16 Total: -1.00 -29.49 209.73 -3.73 -33.22 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.19 Total: -3.59 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.70 Total: -10.55 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.95 Total: -41.01 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.19 Total: 1.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -29.49 -3.73 -33.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235088832.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.516 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds