Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47126 * 119.99670 * 2 1 3 5 5 H 1.08005 * 120.00021 * 119.99724 * 4 2 1 6 6 C 1.37877 * 120.00330 * 300.00195 * 4 2 1 7 7 N 1.31518 * 120.00076 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47242 * 89.99907 * 8 6 4 10 10 H 1.48501 * 109.46990 * 209.99864 * 8 6 4 11 11 H 1.48499 * 109.47048 * 329.99642 * 8 6 4 12 12 C 1.52996 * 109.47472 * 240.00063 * 2 1 3 13 13 C 1.50703 * 109.47399 * 64.99647 * 12 2 1 14 14 N 1.31134 * 126.54839 * 89.97350 * 13 12 2 15 15 C 1.34490 * 105.61260 * 180.02562 * 14 13 12 16 16 N 1.29938 * 107.42847 * 359.97438 * 15 14 13 17 17 O 1.21303 * 110.25257 * 359.97438 * 16 15 14 18 18 H 1.08993 * 109.46857 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47017 * 300.00134 * 1 2 3 20 20 H 1.09008 * 109.46676 * 59.99972 * 1 2 3 21 21 H 0.97001 * 119.99610 * 180.02562 * 7 6 4 22 22 H 1.09008 * 109.47040 * 305.00260 * 12 2 1 23 23 H 1.09001 * 109.47598 * 185.00375 * 12 2 1 24 24 H 1.08000 * 126.28406 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 6 2.0401 -0.7212 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3347 1.0054 -3.0593 15 6 1.5916 1.4058 -4.1064 16 7 0.5049 0.6935 -4.1074 17 8 0.5141 -0.0880 -3.1797 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 1.9026 -0.5283 4.4376 22 1 1.6054 -1.7198 -1.2951 23 1 3.1264 -0.7995 -1.2055 24 1 1.8510 2.1771 -4.8164 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235088832.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 41.590243 kcal Electronic energy + Delta-G solvation = -10836.682634 eV Core-core repulsion = 8752.726819 eV Total energy + Delta-G solvation = -2083.955815 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.51720 -37.61529 -36.51250 -34.32030 -32.74636 -28.75221 -27.13199 -25.31472 -23.69323 -21.56551 -19.19894 -18.85119 -18.32350 -16.79386 -16.13516 -15.41621 -15.28044 -14.79041 -14.18892 -13.58343 -13.35464 -13.02483 -12.82170 -12.39390 -12.27039 -12.03249 -11.77910 -11.43134 -11.11800 -10.85632 -10.68869 -8.28138 -6.31928 0.18295 1.32197 1.34769 1.38674 1.46905 1.88639 2.33455 2.97245 3.08180 3.33472 4.15207 4.18785 4.38078 4.56558 4.79248 4.82865 4.90129 4.97474 5.09274 5.29982 5.59402 5.64383 6.27874 6.75305 7.18510 7.33718 8.87672 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.072314 B = 0.011873 C = 0.011242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.105389 B = 2357.728322 C = 2490.100099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.015 3.985 3 H 0.024 0.976 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.942 3.058 9 H -0.267 1.267 10 H -0.301 1.301 11 H -0.258 1.258 12 C -0.009 4.009 13 C 0.208 3.792 14 N -0.518 5.518 15 C 0.152 3.848 16 N -0.415 5.415 17 O 0.060 5.940 18 H 0.069 0.931 19 H 0.030 0.970 20 H 0.043 0.957 21 H 0.266 0.734 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 3.424 -11.788 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 H 0.042 0.958 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.770 3.230 9 H -0.193 1.193 10 H -0.229 1.229 11 H -0.182 1.182 12 C -0.048 4.048 13 C -0.011 4.011 14 N -0.252 5.252 15 C -0.141 4.141 16 N -0.127 5.127 17 O 0.007 5.993 18 H 0.088 0.912 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -3.084 3.767 -12.267 13.198 hybrid contribution -0.315 0.591 0.637 0.925 sum -3.400 4.358 -11.630 12.877 Atomic orbital electron populations 1.22185 0.97575 1.02076 0.98885 1.19087 0.93119 0.96134 0.92151 0.95830 1.21156 1.31261 1.12874 0.89762 0.92733 1.25701 0.97081 0.99336 0.95688 1.70008 1.47458 1.42262 0.98595 0.85957 0.79523 0.80627 0.76898 1.19276 1.22856 1.18206 1.20386 1.03339 0.97768 0.83341 1.29395 0.81848 0.93716 0.96132 1.72042 1.31144 1.12842 1.09190 1.28221 0.86688 1.01613 0.97590 1.74608 1.23783 1.06631 1.07675 1.85285 1.38619 1.45806 1.29548 0.91209 0.95122 0.93761 0.92491 0.86703 0.87148 0.72058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 8.49 71.98 0.61 -5.31 14 2 C 0.02 0.64 1.88 -11.54 -0.02 0.62 14 3 H 0.02 1.07 7.20 -2.38 -0.02 1.05 14 4 C -0.51 -26.85 9.14 25.60 0.23 -26.62 14 5 H 0.05 3.06 7.99 -2.91 -0.02 3.04 14 6 C 0.02 1.10 5.45 84.65 0.46 1.56 14 7 N -0.94 -56.57 13.96 21.45 0.30 -56.27 14 8 Si 0.94 43.94 24.37 68.60 1.67 45.61 14 9 H -0.27 -11.86 6.87 99.48 0.68 -11.17 14 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 14 11 H -0.26 -11.47 6.53 99.48 0.65 -10.83 14 12 C -0.01 -0.33 5.26 29.85 0.16 -0.17 14 13 C 0.21 6.86 6.92 88.38 0.61 7.47 14 14 N -0.52 -16.86 11.55 -315.47 -3.64 -20.50 14 15 C 0.15 4.07 13.11 180.60 2.37 6.44 14 16 N -0.42 -12.64 12.16 -70.54 -0.86 -13.50 14 17 O 0.06 1.94 10.76 74.85 0.81 2.74 14 18 H 0.07 2.58 8.14 -2.39 -0.02 2.56 14 19 H 0.03 1.28 3.27 -2.39 -0.01 1.27 14 20 H 0.04 1.56 6.94 -2.38 -0.02 1.55 14 21 H 0.27 15.07 8.31 -92.71 -0.77 14.30 14 22 H 0.11 3.48 8.14 -2.38 -0.02 3.46 14 23 H 0.11 3.70 8.14 -2.39 -0.02 3.68 14 24 H 0.26 4.27 8.06 -2.91 -0.02 4.25 14 Total: -1.00 -61.99 209.73 3.82 -58.17 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: 1.12 Total: -0.25 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 4.42 Total: -16.00 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -4.20 Total: -90.27 kcal Atomic # 8 Polarization: 1.94 SS G_CDS: 0.81 Total: 2.74 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -61.99 3.82 -58.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235088832.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.765 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds