Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50695 * 109.47004 * 239.99676 * 2 1 3 14 14 N 1.31129 * 126.54868 * 120.00157 * 13 2 1 15 15 C 1.34503 * 105.61118 * 179.97438 * 14 13 2 16 16 N 1.29941 * 107.42650 * 0.02562 * 15 14 13 17 17 O 1.21310 * 110.25200 * 359.70191 * 16 15 14 18 18 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 20 20 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 21 21 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 22 22 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 24 24 H 1.08001 * 126.28457 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 2.6711 -1.5217 3.8515 9 14 1.4871 0.5561 5.2502 10 1 0.1581 0.0862 5.7173 11 1 2.4921 0.3439 6.3227 12 1 1.4129 2.0021 4.9205 13 6 2.0324 -0.7105 -1.2304 14 7 2.7893 -0.2008 -2.1721 15 6 2.9819 -1.1937 -3.0587 16 7 2.3437 -2.2369 -2.6194 17 8 1.7961 -1.9819 -1.5674 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 3.1264 -0.7994 1.2056 22 1 1.6054 -1.7196 1.2953 23 1 2.9152 -1.8465 4.7324 24 1 3.5600 -1.1345 -3.9690 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235094404.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = 31.692044 kcal Electronic energy + Delta-G solvation = -10691.507449 eV Core-core repulsion = 8607.122415 eV Total energy + Delta-G solvation = -2084.385033 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -46.51932 -37.50245 -36.47785 -34.46962 -32.30432 -28.98283 -26.24180 -25.31387 -24.33336 -21.69572 -18.98924 -18.63853 -18.22182 -16.51331 -16.17935 -15.85650 -14.92772 -14.41236 -13.83199 -13.50842 -13.03798 -12.80469 -12.76210 -12.62855 -12.26025 -12.12537 -11.90323 -11.62532 -11.23924 -10.83731 -10.53539 -8.16839 -6.27386 0.16887 1.32778 1.48070 1.48507 1.59337 1.88975 2.45443 2.91252 3.18717 3.32723 4.09400 4.22718 4.30749 4.62657 4.88482 4.90114 5.06598 5.11142 5.38689 5.42693 5.60420 5.81252 6.17847 6.86925 7.15299 7.41946 8.95691 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.080577 B = 0.010008 C = 0.009554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.409586 B = 2797.180441 C = 2930.114405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.007 3.993 3 H 0.113 0.887 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.211 3.789 14 N -0.517 5.517 15 C 0.154 3.846 16 N -0.418 5.418 17 O 0.052 5.948 18 H 0.054 0.946 19 H 0.083 0.917 20 H 0.069 0.931 21 H -0.012 1.012 22 H 0.005 0.995 23 H 0.262 0.738 24 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 3.360 -8.427 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.131 0.869 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.182 1.182 13 C -0.008 4.008 14 N -0.251 5.251 15 C -0.139 4.139 16 N -0.131 5.131 17 O 0.001 5.999 18 H 0.073 0.927 19 H 0.102 0.898 20 H 0.088 0.912 21 H 0.006 0.994 22 H 0.023 0.977 23 H 0.071 0.929 24 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.671 2.792 -8.930 9.730 hybrid contribution 0.219 -0.004 0.917 0.943 sum -2.452 2.788 -8.013 8.831 Atomic orbital electron populations 1.21741 0.90879 1.02789 1.03284 1.20138 0.98283 0.98362 0.84565 0.86884 1.19051 0.94627 0.95455 0.91206 1.21519 1.35220 1.09007 0.90852 0.90290 1.25965 0.95028 0.95965 1.02842 1.70119 1.39989 1.22981 1.24476 0.85422 0.77843 0.79437 0.78218 1.19772 1.21606 1.18205 1.29575 0.91869 0.81708 0.97665 1.72031 1.17902 1.31015 1.04195 1.28281 0.99591 0.83535 1.02479 1.74623 1.14415 1.25684 0.98402 1.85271 1.55237 1.30089 1.29266 0.92657 0.89777 0.91181 0.99362 0.97704 0.92882 0.71583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.99 71.98 0.65 -3.53 14 2 C 0.01 0.26 2.81 -11.54 -0.03 0.23 14 3 H 0.11 4.17 8.14 -2.39 -0.02 4.15 14 4 C 0.03 1.72 4.43 29.85 0.13 1.85 14 5 C -0.53 -27.47 8.41 25.60 0.22 -27.26 14 6 H 0.08 3.77 7.06 -2.91 -0.02 3.75 14 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 14 8 N -0.94 -55.34 13.29 21.45 0.28 -55.06 14 9 Si 0.97 42.06 29.54 68.60 2.03 44.09 14 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 11 H -0.29 -12.70 7.11 99.48 0.71 -12.00 14 12 H -0.26 -10.55 7.11 99.48 0.71 -9.84 14 13 C 0.21 7.97 7.02 88.38 0.62 8.59 14 14 N -0.52 -18.20 11.55 -315.44 -3.64 -21.85 14 15 C 0.15 4.58 13.11 180.60 2.37 6.95 14 16 N -0.42 -14.63 12.16 -70.49 -0.86 -15.48 14 17 O 0.05 2.01 11.31 74.82 0.85 2.86 14 18 H 0.05 1.81 8.14 -2.39 -0.02 1.79 14 19 H 0.08 2.74 6.95 -2.38 -0.02 2.72 14 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 14 21 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 14 22 H 0.00 0.25 8.14 -2.39 -0.02 0.23 14 23 H 0.26 14.70 8.31 -92.70 -0.77 13.93 14 24 H 0.27 4.83 8.06 -2.91 -0.02 4.81 14 Total: -1.00 -62.47 220.46 4.26 -58.21 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: 1.19 Total: -0.05 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.41 Total: -12.71 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.22 Total: -92.39 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.85 Total: 2.86 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -62.47 4.26 -58.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235094404.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.899 kcal (2) G-P(sol) polarization free energy of solvation -62.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds