Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.50699 * 109.46547 * 240.00501 * 2 1 3 5 5 H 1.08001 * 120.00331 * 275.00625 * 4 2 1 6 6 C 1.37882 * 120.00313 * 95.01609 * 4 2 1 7 7 N 1.31506 * 120.00363 * 184.87627 * 6 4 2 8 8 Si 1.86807 * 119.99495 * 4.87281 * 6 4 2 9 9 H 1.48501 * 109.47166 * 84.76601 * 8 6 4 10 10 H 1.48507 * 109.46927 * 204.76270 * 8 6 4 11 11 H 1.48499 * 109.47285 * 324.76247 * 8 6 4 12 12 C 1.52996 * 109.47193 * 120.00833 * 2 1 3 13 13 C 1.50700 * 109.46798 * 294.99404 * 12 2 1 14 14 N 1.31126 * 126.55009 * 89.71849 * 13 12 2 15 15 C 1.34495 * 105.61897 * 179.91723 * 14 13 12 16 16 N 1.29955 * 107.42181 * 0.34644 * 15 14 13 17 17 O 1.21305 * 110.24641 * 359.77824 * 16 15 14 18 18 H 1.09001 * 109.46673 * 295.27524 * 1 2 3 19 19 H 1.08994 * 109.47300 * 55.27353 * 1 2 3 20 20 H 1.08999 * 109.47053 * 175.27889 * 1 2 3 21 21 H 0.97002 * 120.00567 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.46890 * 175.00135 * 12 2 1 23 23 H 1.08990 * 109.47331 * 54.99532 * 12 2 1 24 24 H 1.07995 * 126.29457 * 180.12925 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1353 -1.7854 -1.2293 6 6 2.3604 0.0123 -2.3581 7 7 2.7067 -0.6128 -3.4620 8 14 2.3130 1.8793 -2.3174 9 1 3.5976 2.3955 -1.7801 10 1 2.1074 2.3993 -3.6932 11 1 1.1965 2.3273 -1.4468 12 6 2.0401 -0.7214 1.2491 13 6 1.6415 0.0568 2.4765 14 7 0.5325 -0.0809 3.1625 15 6 0.6127 0.8133 4.1639 16 7 1.7421 1.4429 4.0338 17 8 2.3481 1.0232 3.0705 18 1 -0.3633 0.4388 0.9293 19 1 -0.3633 0.5854 -0.8446 20 1 -0.3633 -1.0242 -0.0846 21 1 2.9373 -0.1045 -4.2554 22 1 3.1264 -0.7996 1.2054 23 1 1.6054 -1.7199 1.2949 24 1 -0.1272 0.9802 4.9327 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235400811.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = 55.831966 kcal Electronic energy + Delta-G solvation = -10807.057656 eV Core-core repulsion = 8723.719408 eV Total energy + Delta-G solvation = -2083.338248 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.20769 -36.00360 -34.95861 -32.47973 -31.10159 -27.04042 -25.26182 -24.00892 -22.18221 -19.71243 -17.77533 -17.28178 -16.86066 -14.86117 -14.45995 -14.23825 -13.08862 -12.81760 -12.43157 -12.32939 -11.64005 -11.40960 -11.01605 -10.75434 -10.66894 -10.52966 -9.98874 -9.80471 -9.39521 -9.15450 -8.61813 -6.16637 -4.17789 1.52647 2.61635 3.24983 3.27537 3.34048 3.36291 4.18552 4.35379 4.53207 5.16321 5.48780 5.81696 5.98822 6.07146 6.28095 6.34157 6.51727 6.69371 6.80631 7.10455 7.33200 7.63153 8.38615 8.49313 8.86613 9.45162 10.95930 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.064442 B = 0.012247 C = 0.011551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.393001 B = 2285.774716 C = 2423.496055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.016 3.984 3 H 0.035 0.965 4 C -0.515 4.515 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.023 4.023 13 C 0.210 3.790 14 N -0.498 5.498 15 C 0.139 3.861 16 N -0.403 5.403 17 O 0.065 5.935 18 H 0.026 0.974 19 H 0.043 0.957 20 H 0.050 0.950 21 H 0.266 0.734 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 2.395 10.017 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 H 0.053 0.947 4 C -0.553 4.553 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.062 4.062 13 C -0.008 4.008 14 N -0.232 5.232 15 C -0.154 4.154 16 N -0.114 5.114 17 O 0.010 5.990 18 H 0.045 0.955 19 H 0.062 0.938 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.121 0.879 24 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.233 2.876 10.460 11.076 hybrid contribution -0.120 1.026 -0.091 1.037 sum -2.354 3.902 10.368 11.326 Atomic orbital electron populations 1.22042 0.98141 1.00973 0.98685 1.19189 0.93201 0.96121 0.91903 0.94667 1.20823 1.44269 0.95542 0.94624 0.90306 1.25009 0.94189 0.98261 0.95223 1.69880 1.45657 1.35971 1.01690 0.86912 0.79271 0.86429 0.77303 1.19858 1.21412 1.19058 1.20833 1.03109 0.97441 0.84836 1.29757 0.85748 0.88602 0.96735 1.72029 1.20937 1.23611 1.06611 1.27437 0.96090 0.92360 0.99549 1.74612 1.09698 1.22099 1.04989 1.85277 1.42277 1.41442 1.30047 0.95503 0.93811 0.93049 0.92429 0.88302 0.87866 0.76303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.06 37.16 0.34 -2.61 14 2 C 0.02 0.35 1.95 -91.77 -0.18 0.17 14 3 H 0.04 0.80 5.30 -51.93 -0.28 0.52 14 4 C -0.51 -13.39 8.86 -34.44 -0.31 -13.70 14 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 14 6 C 0.08 2.08 5.47 -17.82 -0.10 1.98 14 7 N -0.89 -26.18 13.96 55.43 0.77 -25.41 14 8 Si 0.87 20.84 26.99 -169.99 -4.59 16.25 14 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 14 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 11 H -0.27 -6.18 6.82 56.52 0.39 -5.79 14 12 C -0.02 -0.42 5.30 -27.89 -0.15 -0.56 14 13 C 0.21 3.73 6.98 -13.06 -0.09 3.64 14 14 N -0.50 -8.62 10.72 -13.74 -0.15 -8.76 14 15 C 0.14 2.10 13.11 -91.32 -1.20 0.90 14 16 N -0.40 -6.83 12.16 27.68 0.34 -6.49 14 17 O 0.06 1.16 11.31 18.11 0.20 1.36 14 18 H 0.03 0.52 6.59 -51.93 -0.34 0.18 14 19 H 0.04 0.94 8.14 -51.93 -0.42 0.52 14 20 H 0.05 1.04 8.14 -51.93 -0.42 0.62 14 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 14 22 H 0.10 1.66 8.14 -51.93 -0.42 1.24 14 23 H 0.10 1.77 8.14 -51.93 -0.42 1.35 14 24 H 0.22 2.28 8.06 -52.49 -0.42 1.86 14 LS Contribution 215.77 15.07 3.25 3.25 Total: -1.00 -29.03 215.77 -4.15 -33.19 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.68 Total: -10.18 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.96 Total: -40.66 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.59 Total: 16.25 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.03 -4.15 -33.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235400811.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.019 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds