Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.50699 * 109.46547 * 240.00501 * 2 1 3 5 5 H 1.08001 * 120.00331 * 275.00625 * 4 2 1 6 6 C 1.37882 * 120.00313 * 95.01609 * 4 2 1 7 7 N 1.31506 * 120.00363 * 184.87627 * 6 4 2 8 8 Si 1.86807 * 119.99495 * 4.87281 * 6 4 2 9 9 H 1.48501 * 109.47166 * 84.76601 * 8 6 4 10 10 H 1.48507 * 109.46927 * 204.76270 * 8 6 4 11 11 H 1.48499 * 109.47285 * 324.76247 * 8 6 4 12 12 C 1.52996 * 109.47193 * 120.00833 * 2 1 3 13 13 C 1.50700 * 109.46798 * 294.99404 * 12 2 1 14 14 N 1.31126 * 126.55009 * 89.71849 * 13 12 2 15 15 C 1.34495 * 105.61897 * 179.91723 * 14 13 12 16 16 N 1.29955 * 107.42181 * 0.34644 * 15 14 13 17 17 O 1.21305 * 110.24641 * 359.77824 * 16 15 14 18 18 H 1.09001 * 109.46673 * 295.27524 * 1 2 3 19 19 H 1.08994 * 109.47300 * 55.27353 * 1 2 3 20 20 H 1.08999 * 109.47053 * 175.27889 * 1 2 3 21 21 H 0.97002 * 120.00567 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.46890 * 175.00135 * 12 2 1 23 23 H 1.08990 * 109.47331 * 54.99532 * 12 2 1 24 24 H 1.07995 * 126.29457 * 180.12925 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1353 -1.7854 -1.2293 6 6 2.3604 0.0123 -2.3581 7 7 2.7067 -0.6128 -3.4620 8 14 2.3130 1.8793 -2.3174 9 1 3.5976 2.3955 -1.7801 10 1 2.1074 2.3993 -3.6932 11 1 1.1965 2.3273 -1.4468 12 6 2.0401 -0.7214 1.2491 13 6 1.6415 0.0568 2.4765 14 7 0.5325 -0.0809 3.1625 15 6 0.6127 0.8133 4.1639 16 7 1.7421 1.4429 4.0338 17 8 2.3481 1.0232 3.0705 18 1 -0.3633 0.4388 0.9293 19 1 -0.3633 0.5854 -0.8446 20 1 -0.3633 -1.0242 -0.0846 21 1 2.9373 -0.1045 -4.2554 22 1 3.1264 -0.7996 1.2054 23 1 1.6054 -1.7199 1.2949 24 1 -0.1272 0.9802 4.9327 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235400811.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = 36.557022 kcal Electronic energy + Delta-G solvation = -10807.893480 eV Core-core repulsion = 8723.719408 eV Total energy + Delta-G solvation = -2084.174072 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.49472 -37.57986 -36.38233 -34.29122 -32.71647 -28.56743 -27.21836 -25.26297 -23.60788 -21.41601 -19.33660 -18.85411 -18.35202 -16.41952 -16.08094 -15.78862 -14.77104 -14.47909 -14.15891 -13.93750 -13.11467 -12.93249 -12.68570 -12.57795 -12.13974 -12.00368 -11.79136 -11.60529 -11.10495 -10.85527 -10.65977 -8.26696 -6.30632 0.19726 1.36182 1.38400 1.40501 1.48259 1.91036 2.36694 2.97872 3.10887 3.35819 4.17644 4.24235 4.47852 4.64082 4.85822 4.94517 4.96848 5.00507 5.17098 5.39216 5.61485 5.68954 6.30603 6.77226 7.19705 7.35453 8.89257 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.064442 B = 0.012247 C = 0.011551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.393001 B = 2285.774716 C = 2423.496055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.014 3.986 3 H 0.032 0.968 4 C -0.509 4.509 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.930 3.070 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.254 1.254 12 C -0.015 4.015 13 C 0.207 3.793 14 N -0.509 5.509 15 C 0.153 3.847 16 N -0.417 5.417 17 O 0.052 5.948 18 H 0.041 0.959 19 H 0.032 0.968 20 H 0.052 0.948 21 H 0.266 0.734 22 H 0.109 0.891 23 H 0.112 0.888 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 3.432 11.751 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.006 4.006 3 H 0.050 0.950 4 C -0.547 4.547 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.755 3.245 9 H -0.188 1.188 10 H -0.216 1.216 11 H -0.178 1.178 12 C -0.054 4.054 13 C -0.012 4.012 14 N -0.243 5.243 15 C -0.140 4.140 16 N -0.130 5.130 17 O 0.000 6.000 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.127 0.873 23 H 0.130 0.870 24 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.943 3.915 12.205 13.151 hybrid contribution 0.058 0.629 -0.543 0.833 sum -2.885 4.543 11.663 12.845 Atomic orbital electron populations 1.21926 0.97165 1.01052 0.98996 1.19117 0.93860 0.95763 0.91868 0.94986 1.21075 1.42931 0.94536 0.96164 0.93186 1.25773 0.94376 1.02651 0.94954 1.70014 1.48005 1.37731 1.02586 0.85994 0.79940 0.81259 0.77297 1.18848 1.21633 1.17829 1.20557 1.03797 0.97376 0.83704 1.29479 0.86112 0.88782 0.96845 1.72053 1.20680 1.24304 1.07263 1.28245 0.95980 0.90517 0.99237 1.74627 1.10575 1.22776 1.05056 1.85275 1.42709 1.41524 1.30485 0.93959 0.94858 0.92917 0.92484 0.87291 0.86989 0.72029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 9.06 71.98 0.65 -4.70 14 2 C 0.01 0.60 1.95 -11.54 -0.02 0.57 14 3 H 0.03 1.38 5.30 -2.39 -0.01 1.37 14 4 C -0.51 -26.52 8.86 25.60 0.23 -26.29 14 5 H 0.05 2.83 8.06 -2.91 -0.02 2.81 14 6 C 0.02 1.12 5.47 84.66 0.46 1.58 14 7 N -0.94 -56.25 13.96 21.45 0.30 -55.95 14 8 Si 0.93 42.52 26.99 68.60 1.85 44.37 14 9 H -0.26 -11.56 7.11 99.48 0.71 -10.86 14 10 H -0.29 -13.27 7.11 99.48 0.71 -12.56 14 11 H -0.25 -11.03 6.82 99.48 0.68 -10.35 14 12 C -0.02 -0.53 5.30 29.85 0.16 -0.37 14 13 C 0.21 6.85 6.98 88.38 0.62 7.46 14 14 N -0.51 -16.01 10.72 -315.44 -3.38 -19.39 14 15 C 0.15 4.05 13.11 180.59 2.37 6.42 14 16 N -0.42 -12.94 12.16 -70.48 -0.86 -13.79 14 17 O 0.05 1.73 11.31 74.85 0.85 2.58 14 18 H 0.04 1.55 6.59 -2.39 -0.02 1.53 14 19 H 0.03 1.37 8.14 -2.39 -0.02 1.35 14 20 H 0.05 2.06 8.14 -2.39 -0.02 2.04 14 21 H 0.27 14.97 8.31 -92.71 -0.77 14.20 14 22 H 0.11 3.52 8.14 -2.39 -0.02 3.50 14 23 H 0.11 3.67 8.14 -2.39 -0.02 3.65 14 24 H 0.26 4.16 8.06 -2.91 -0.02 4.14 14 Total: -1.00 -61.08 215.77 4.39 -56.69 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.17 Total: 0.82 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.46 Total: -15.33 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -3.94 Total: -89.14 kcal Atomic # 8 Polarization: 1.73 SS G_CDS: 0.85 Total: 2.58 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.85 Total: 44.37 kcal Total: -61.08 4.39 -56.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235400811.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.250 kcal (2) G-P(sol) polarization free energy of solvation -61.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds