Wall clock time and date at job start Mon Mar 30 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 14 14 N 1.31130 * 126.55213 * 239.71798 * 13 2 1 15 15 C 1.34494 * 105.61672 * 179.91587 * 14 13 2 16 16 N 1.29954 * 107.42260 * 0.35061 * 15 14 13 17 17 O 1.21298 * 110.25083 * 359.77314 * 16 15 14 18 18 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 19 19 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 21 21 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 22 22 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 23 23 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 24 24 H 1.08000 * 126.29007 * 180.12285 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 0.7432 1.7748 -4.8434 11 1 2.7182 0.9680 -5.9958 12 1 0.6460 -0.2857 -6.1189 13 6 2.0324 -0.7103 1.2305 14 7 2.7935 -0.2021 2.1696 15 6 2.9822 -1.1934 3.0587 16 7 2.3443 -2.2368 2.6193 17 8 1.7919 -1.9803 1.5703 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6055 -1.7198 -1.2951 22 1 3.1264 -0.7994 -1.2055 23 1 2.9238 -1.8418 -4.7316 24 1 3.5608 -1.1343 3.9687 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411442.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:32 Heat of formation + Delta-G solvation = 31.644633 kcal Electronic energy + Delta-G solvation = -10691.491215 eV Core-core repulsion = 8607.104126 eV Total energy + Delta-G solvation = -2084.387089 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -46.52061 -37.50284 -36.47838 -34.47127 -32.30364 -28.98419 -26.24204 -25.31473 -24.33460 -21.69657 -18.99089 -18.64046 -18.22195 -16.51150 -16.18185 -15.85779 -14.92678 -14.41489 -13.83340 -13.51028 -13.04145 -12.81486 -12.76891 -12.62392 -12.24351 -12.12239 -11.90767 -11.62848 -11.21958 -10.83551 -10.54799 -8.17080 -6.27527 0.16894 1.32790 1.46874 1.48205 1.60490 1.89001 2.45266 2.91253 3.18618 3.32717 4.09430 4.22744 4.30810 4.62702 4.88568 4.90155 5.06742 5.11206 5.38799 5.42780 5.60402 5.81354 6.17795 6.87067 7.15369 7.41868 8.95675 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.080501 B = 0.010007 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.736935 B = 2797.351922 C = 2929.841250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.007 3.993 3 H 0.113 0.887 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.254 1.254 11 H -0.285 1.285 12 H -0.282 1.282 13 C 0.211 3.789 14 N -0.517 5.517 15 C 0.154 3.846 16 N -0.418 5.418 17 O 0.052 5.948 18 H 0.083 0.917 19 H 0.054 0.946 20 H 0.069 0.931 21 H 0.005 0.995 22 H -0.012 1.012 23 H 0.262 0.738 24 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 3.372 8.454 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.131 0.869 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.211 1.211 12 H -0.208 1.208 13 C -0.008 4.008 14 N -0.251 5.251 15 C -0.139 4.139 16 N -0.131 5.131 17 O 0.002 5.998 18 H 0.102 0.898 19 H 0.074 0.926 20 H 0.088 0.912 21 H 0.023 0.977 22 H 0.006 0.994 23 H 0.071 0.929 24 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.694 2.805 8.956 9.764 hybrid contribution 0.243 -0.005 -0.923 0.955 sum -2.451 2.799 8.033 8.853 Atomic orbital electron populations 1.21739 0.90874 1.02796 1.03278 1.20139 0.98290 0.98362 0.84553 0.86883 1.19057 0.94621 0.95473 0.91219 1.21548 1.35069 1.09007 0.90851 0.90273 1.25964 0.95036 0.95981 1.02848 1.70122 1.40008 1.23016 1.24440 0.85375 0.77883 0.79002 0.78656 1.17714 1.21133 1.20810 1.29579 0.91772 0.81803 0.97672 1.72025 1.17900 1.31059 1.04162 1.28282 0.99672 0.83509 1.02430 1.74624 1.14383 1.25595 0.98522 1.85268 1.54923 1.30167 1.29487 0.89788 0.92641 0.91186 0.97688 0.99370 0.92884 0.71587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.99 71.98 0.65 -3.53 14 2 C 0.01 0.27 2.81 -11.54 -0.03 0.23 14 3 H 0.11 4.17 8.14 -2.39 -0.02 4.15 14 4 C 0.03 1.70 4.43 29.85 0.13 1.84 14 5 C -0.53 -27.40 8.41 25.60 0.22 -27.18 14 6 H 0.08 3.78 7.06 -2.91 -0.02 3.76 14 7 C 0.00 -0.03 5.46 84.66 0.46 0.44 14 8 N -0.94 -55.34 13.29 21.45 0.28 -55.05 14 9 Si 0.97 42.08 29.54 68.60 2.03 44.11 14 10 H -0.25 -10.24 7.11 99.48 0.71 -9.53 14 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 14 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 14 13 C 0.21 7.96 7.02 88.38 0.62 8.58 14 14 N -0.52 -18.20 11.55 -315.43 -3.64 -21.85 14 15 C 0.15 4.58 13.11 180.59 2.37 6.95 14 16 N -0.42 -14.63 12.16 -70.49 -0.86 -15.48 14 17 O 0.05 2.02 11.31 74.80 0.85 2.87 14 18 H 0.08 2.74 6.95 -2.39 -0.02 2.72 14 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 14 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 14 21 H 0.00 0.26 8.14 -2.39 -0.02 0.24 14 22 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 14 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 14 24 H 0.27 4.83 8.06 -2.91 -0.02 4.81 14 Total: -1.00 -62.51 220.46 4.26 -58.24 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: 1.19 Total: -0.16 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.41 Total: -12.68 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.22 Total: -92.38 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -62.51 4.26 -58.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411442.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.889 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds