Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99973 * 2 1 4 4 C 1.39101 * 125.51757 * 180.02562 * 3 2 1 5 5 C 1.39751 * 107.50668 * 179.97438 * 4 3 2 6 6 C 1.40227 * 126.61383 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99427 * 187.00262 * 6 5 4 8 8 C 1.40143 * 120.00406 * 7.00062 * 6 5 4 9 9 N 1.30771 * 119.99888 * 12.26913 * 8 6 5 10 10 Si 1.86800 * 120.00206 * 192.26470 * 8 6 5 11 11 H 1.48498 * 109.46989 * 93.93733 * 10 8 6 12 12 H 1.48506 * 109.47059 * 213.93909 * 10 8 6 13 13 H 1.48503 * 109.46689 * 333.93648 * 10 8 6 14 14 N 1.37500 * 106.76422 * 359.97438 * 5 4 3 15 15 C 1.46500 * 126.15451 * 180.02562 * 14 5 4 16 16 N 1.31568 * 125.52038 * 359.97438 * 3 2 1 17 17 H 1.08999 * 109.47057 * 299.99914 * 1 2 3 18 18 H 1.08993 * 109.47051 * 59.99849 * 1 2 3 19 19 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 20 20 H 1.08003 * 126.25092 * 359.96407 * 4 3 2 21 21 H 0.96999 * 120.00187 * 180.02562 * 9 8 6 22 22 H 1.09005 * 109.47296 * 270.02833 * 15 14 5 23 23 H 1.08998 * 109.47428 * 30.02655 * 15 14 5 24 24 H 1.09004 * 109.47444 * 150.02450 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4220 1.4175 -0.0005 5 6 3.6403 2.7978 -0.0009 6 6 4.8827 3.4480 -0.0010 7 1 4.9306 4.5210 0.1127 8 6 6.0622 2.7057 -0.1485 9 7 6.0045 1.4542 -0.5235 10 14 7.7168 3.5038 0.1902 11 1 8.1171 3.2362 1.5950 12 1 8.7362 2.9402 -0.7310 13 1 7.6124 4.9696 -0.0241 14 7 2.4019 3.3953 -0.0012 15 6 2.1374 4.8362 -0.0022 16 7 1.4392 2.3787 -0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 4.1826 0.6507 -0.0004 21 1 6.8208 0.9402 -0.6253 22 1 2.0724 5.1944 1.0252 23 1 2.9469 5.3539 -0.5169 24 1 1.1962 5.0325 -0.5158 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238392728.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 28.609973 kcal Electronic energy + Delta-G solvation = -10783.978020 eV Core-core repulsion = 8699.459337 eV Total energy + Delta-G solvation = -2084.518682 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.12078 -36.90532 -33.63580 -31.19821 -28.84490 -26.97096 -25.07822 -24.42966 -19.83436 -19.29636 -17.03801 -15.81454 -14.86800 -14.81251 -14.43159 -13.65007 -13.61957 -12.44314 -12.33864 -11.68072 -11.52805 -11.28488 -11.16025 -10.96422 -10.53510 -10.11368 -9.99951 -9.33865 -8.68454 -7.47110 -6.75197 -6.64765 -4.51178 2.92506 3.06238 3.09732 3.60823 3.81260 3.97468 4.48554 4.69180 5.30060 5.81611 5.87050 5.93021 6.11603 6.15731 6.26130 6.84066 7.04381 7.38574 7.48751 7.91739 8.21028 8.42747 8.73304 8.97848 9.15599 9.58567 10.21283 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.056062 B = 0.013330 C = 0.010925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.329281 B = 2100.048313 C = 2562.355186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.252 3.748 4 C -0.360 4.360 5 C 0.276 3.724 6 C -0.454 4.454 7 H 0.080 0.920 8 C 0.080 3.920 9 N -0.776 5.776 10 Si 0.923 3.077 11 H -0.268 1.268 12 H -0.276 1.276 13 H -0.262 1.262 14 N -0.428 5.428 15 C 0.135 3.865 16 N -0.438 5.438 17 H 0.044 0.956 18 H 0.044 0.956 19 H 0.081 0.919 20 H 0.154 0.846 21 H 0.281 0.719 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 2.197 0.675 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.054 3.946 4 C -0.390 4.390 5 C 0.157 3.843 6 C -0.490 4.490 7 H 0.098 0.902 8 C -0.141 4.141 9 N -0.402 5.402 10 Si 0.747 3.253 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.186 1.186 14 N -0.222 5.222 15 C -0.008 4.008 16 N -0.278 5.278 17 H 0.063 0.937 18 H 0.063 0.937 19 H 0.099 0.901 20 H 0.171 0.829 21 H 0.092 0.908 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.504 2.332 0.609 3.476 hybrid contribution 1.200 0.072 0.132 1.210 sum -1.304 2.404 0.740 2.833 Atomic orbital electron populations 1.22628 0.80507 1.01261 1.01040 1.86204 1.19917 1.24364 1.90626 1.20394 0.92296 0.83901 0.98002 1.21129 0.90727 0.95549 1.31626 1.18589 0.84597 0.90328 0.90768 1.18613 0.88539 0.95035 1.46808 0.90209 1.25798 1.01305 0.94680 0.92311 1.69819 1.30476 1.08545 1.31326 0.86069 0.79999 0.80079 0.79115 1.19309 1.20114 1.18640 1.47808 1.03258 1.03228 1.67883 1.21160 1.01230 0.77946 1.00459 1.76806 1.14659 0.94316 1.41986 0.93731 0.93712 0.90059 0.82864 0.90786 0.93859 0.91014 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.68 101.05 1.08 1.87 14 2 O -0.30 -7.47 10.58 -19.63 -0.21 -7.67 14 3 C 0.25 6.98 7.82 -17.34 -0.14 6.84 14 4 C -0.36 -10.54 9.74 -38.70 -0.38 -10.92 14 5 C 0.28 7.78 6.71 -84.01 -0.56 7.22 14 6 C -0.45 -12.00 8.96 -38.12 -0.34 -12.35 14 7 H 0.08 1.94 7.34 -52.49 -0.39 1.56 14 8 C 0.08 2.01 5.44 -17.29 -0.09 1.92 14 9 N -0.78 -20.33 10.59 55.56 0.59 -19.74 14 10 Si 0.92 18.36 29.58 -169.99 -5.03 13.33 14 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 14 13 H -0.26 -5.08 7.11 56.52 0.40 -4.67 14 14 N -0.43 -11.20 4.09 -65.38 -0.27 -11.47 14 15 C 0.14 2.70 11.25 59.85 0.67 3.37 14 16 N -0.44 -11.85 11.91 30.39 0.36 -11.49 14 17 H 0.04 0.82 8.14 -51.93 -0.42 0.40 14 18 H 0.04 0.83 8.14 -51.93 -0.42 0.40 14 19 H 0.08 1.19 8.14 -51.93 -0.42 0.77 14 20 H 0.15 4.61 6.04 -52.48 -0.32 4.29 14 21 H 0.28 6.61 8.29 -40.82 -0.34 6.27 14 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 14 23 H 0.07 1.32 7.48 -51.93 -0.39 0.93 14 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 LS Contribution 218.53 15.07 3.29 3.29 Total: -1.00 -31.29 218.53 -3.36 -34.64 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.34 Total: 1.16 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 0.24 Total: -2.05 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.68 Total: -42.70 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.21 Total: -7.67 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.29 -3.36 -34.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238392728.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.254 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds