Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99973 * 2 1 4 4 C 1.39101 * 125.51757 * 180.02562 * 3 2 1 5 5 C 1.39751 * 107.50668 * 179.97438 * 4 3 2 6 6 C 1.40227 * 126.61383 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99427 * 187.00262 * 6 5 4 8 8 C 1.40143 * 120.00406 * 7.00062 * 6 5 4 9 9 N 1.30771 * 119.99888 * 12.26913 * 8 6 5 10 10 Si 1.86800 * 120.00206 * 192.26470 * 8 6 5 11 11 H 1.48498 * 109.46989 * 93.93733 * 10 8 6 12 12 H 1.48506 * 109.47059 * 213.93909 * 10 8 6 13 13 H 1.48503 * 109.46689 * 333.93648 * 10 8 6 14 14 N 1.37500 * 106.76422 * 359.97438 * 5 4 3 15 15 C 1.46500 * 126.15451 * 180.02562 * 14 5 4 16 16 N 1.31568 * 125.52038 * 359.97438 * 3 2 1 17 17 H 1.08999 * 109.47057 * 299.99914 * 1 2 3 18 18 H 1.08993 * 109.47051 * 59.99849 * 1 2 3 19 19 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 20 20 H 1.08003 * 126.25092 * 359.96407 * 4 3 2 21 21 H 0.96999 * 120.00187 * 180.02562 * 9 8 6 22 22 H 1.09005 * 109.47296 * 270.02833 * 15 14 5 23 23 H 1.08998 * 109.47428 * 30.02655 * 15 14 5 24 24 H 1.09004 * 109.47444 * 150.02450 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4220 1.4175 -0.0005 5 6 3.6403 2.7978 -0.0009 6 6 4.8827 3.4480 -0.0010 7 1 4.9306 4.5210 0.1127 8 6 6.0622 2.7057 -0.1485 9 7 6.0045 1.4542 -0.5235 10 14 7.7168 3.5038 0.1902 11 1 8.1171 3.2362 1.5950 12 1 8.7362 2.9402 -0.7310 13 1 7.6124 4.9696 -0.0241 14 7 2.4019 3.3953 -0.0012 15 6 2.1374 4.8362 -0.0022 16 7 1.4392 2.3787 -0.0005 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 4.1826 0.6507 -0.0004 21 1 6.8208 0.9402 -0.6253 22 1 2.0724 5.1944 1.0252 23 1 2.9469 5.3539 -0.5169 24 1 1.1962 5.0325 -0.5158 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238392728.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 4.968156 kcal Electronic energy + Delta-G solvation = -10785.003206 eV Core-core repulsion = 8699.459337 eV Total energy + Delta-G solvation = -2085.543868 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10840 -38.77029 -35.58381 -33.04239 -30.86703 -28.62555 -27.06709 -26.19944 -21.85465 -21.20606 -18.99736 -17.77437 -16.68539 -16.66731 -16.15053 -15.37898 -15.34245 -14.26265 -14.18896 -13.48822 -13.24286 -12.95378 -12.84929 -12.62264 -12.20743 -11.86083 -11.83482 -11.19841 -10.74278 -9.50203 -8.72992 -8.60519 -6.56100 1.24410 1.44709 1.61179 1.75353 2.04226 2.25105 2.43763 2.92752 3.29081 4.17600 4.42712 4.47824 4.62702 4.64956 4.74418 4.97654 5.12067 5.36553 5.51962 5.92804 6.08520 6.41385 6.73242 6.96356 7.17397 7.53457 8.34820 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.056062 B = 0.013330 C = 0.010925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.329281 B = 2100.048313 C = 2562.355186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.244 3.756 4 C -0.405 4.405 5 C 0.255 3.745 6 C -0.474 4.474 7 H 0.098 0.902 8 C 0.035 3.965 9 N -0.810 5.810 10 Si 1.007 2.993 11 H -0.264 1.264 12 H -0.268 1.268 13 H -0.248 1.248 14 N -0.438 5.438 15 C 0.126 3.874 16 N -0.444 5.444 17 H 0.045 0.955 18 H 0.044 0.956 19 H 0.127 0.873 20 H 0.134 0.866 21 H 0.291 0.709 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 3.379 0.868 3.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.046 3.954 4 C -0.436 4.436 5 C 0.135 3.865 6 C -0.509 4.509 7 H 0.116 0.884 8 C -0.184 4.184 9 N -0.435 5.435 10 Si 0.826 3.174 11 H -0.188 1.188 12 H -0.192 1.192 13 H -0.171 1.171 14 N -0.232 5.232 15 C -0.015 4.015 16 N -0.284 5.284 17 H 0.064 0.936 18 H 0.063 0.937 19 H 0.145 0.855 20 H 0.152 0.848 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.942 3.520 0.796 4.098 hybrid contribution 0.953 -0.335 0.052 1.012 sum -0.989 3.185 0.848 3.441 Atomic orbital electron populations 1.22980 0.77425 1.04306 1.01065 1.86163 1.23013 1.23129 1.90417 1.20525 0.92190 0.84934 0.97791 1.21170 0.91448 0.96255 1.34714 1.18968 0.86061 0.90551 0.90876 1.19089 0.88645 0.96142 1.47063 0.88419 1.26972 1.05360 0.95007 0.91030 1.69913 1.32304 1.10212 1.31094 0.84828 0.74071 0.79529 0.78972 1.18850 1.19216 1.17138 1.48228 1.02451 1.04902 1.67589 1.21536 1.02816 0.74907 1.02234 1.76700 1.15212 0.94444 1.42083 0.93588 0.93715 0.85540 0.84831 0.89840 0.91936 0.89538 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.68 113.37 1.21 2.57 14 2 O -0.32 -15.83 10.58 -93.14 -0.99 -16.82 14 3 C 0.24 13.78 7.82 84.94 0.66 14.44 14 4 C -0.41 -24.51 9.74 22.84 0.22 -24.28 14 5 C 0.25 14.54 6.71 39.10 0.26 14.80 14 6 C -0.47 -24.86 8.96 23.22 0.21 -24.65 14 7 H 0.10 4.60 7.34 -2.91 -0.02 4.58 14 8 C 0.03 1.72 5.44 85.31 0.46 2.18 14 9 N -0.81 -42.89 10.59 21.86 0.23 -42.66 14 10 Si 1.01 36.32 29.58 68.60 2.03 38.35 14 11 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 12 H -0.27 -9.22 7.11 99.48 0.71 -8.52 14 13 H -0.25 -8.35 7.11 99.48 0.71 -7.64 14 14 N -0.44 -22.77 4.09 -360.77 -1.48 -24.24 14 15 C 0.13 4.81 11.25 127.77 1.44 6.25 14 16 N -0.44 -24.10 11.91 -170.83 -2.03 -26.13 14 17 H 0.05 1.64 8.14 -2.39 -0.02 1.62 14 18 H 0.04 1.61 8.14 -2.39 -0.02 1.59 14 19 H 0.13 3.39 8.14 -2.39 -0.02 3.37 14 20 H 0.13 8.43 6.04 -2.91 -0.02 8.42 14 21 H 0.29 13.73 8.29 -92.71 -0.77 12.96 14 22 H 0.06 2.13 8.14 -2.38 -0.02 2.11 14 23 H 0.09 3.01 7.48 -2.39 -0.02 2.99 14 24 H 0.08 2.74 8.14 -2.38 -0.02 2.72 14 Total: -1.00 -68.03 218.53 3.43 -64.59 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.20 Total: 15.60 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.47 Total: -8.70 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.28 Total: -93.04 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.99 Total: -16.82 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -68.03 3.43 -64.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238392728.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.563 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds