Wall clock time and date at job start Mon Mar 30 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30258 * 125.61778 * 2 1 4 4 C 1.34477 * 108.69525 * 179.97438 * 3 2 1 5 5 C 1.34326 * 107.67294 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44278 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47607 * 20.00712 * 6 5 4 8 8 N 1.46901 * 109.47110 * 140.00293 * 6 5 4 9 9 C 1.50702 * 109.47465 * 259.99916 * 6 5 4 10 10 H 1.08002 * 119.99441 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00075 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00481 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99886 * 179.73007 * 11 9 6 14 14 H 1.48502 * 109.46964 * 270.27509 * 13 11 9 15 15 H 1.48505 * 109.47036 * 30.26897 * 13 11 9 16 16 H 1.48490 * 109.47395 * 150.27411 * 13 11 9 17 17 O 1.33968 * 125.61561 * 180.27652 * 2 1 3 18 18 H 1.09003 * 109.46690 * 90.03092 * 1 2 3 19 19 H 1.08996 * 109.47284 * 210.02981 * 1 2 3 20 20 H 1.09000 * 109.46898 * 330.03242 * 1 2 3 21 21 H 1.08007 * 126.16146 * 180.02562 * 4 3 2 22 22 H 1.00908 * 111.00077 * 296.04383 * 8 6 5 23 23 H 1.00905 * 111.00224 * 59.99512 * 8 6 5 24 24 H 0.97005 * 119.99656 * 359.72741 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0015 6 6 4.7937 -1.5549 0.0029 7 1 5.6519 -0.9825 0.3547 8 7 4.5717 -2.7017 0.8938 9 6 5.0587 -2.0494 -1.3958 10 1 4.4063 -1.7559 -2.2049 11 6 6.1339 -2.8764 -1.6424 12 7 6.9287 -3.2333 -0.6572 13 14 6.4581 -3.4954 -3.3749 14 1 5.7351 -4.7751 -3.5866 15 1 5.9811 -2.4891 -4.3574 16 1 7.9153 -3.7140 -3.5579 17 8 2.2872 -1.0891 -0.0053 18 1 -0.3633 -0.0006 -1.0277 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3633 0.8903 0.5133 21 1 4.4157 1.3162 0.0011 22 1 4.4556 -2.4000 1.8497 23 1 3.7806 -3.2488 0.5887 24 1 6.7606 -2.9116 0.2423 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259533025.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:09 Heat of formation + Delta-G solvation = 11.207237 kcal Electronic energy + Delta-G solvation = -10784.125040 eV Core-core repulsion = 8698.851718 eV Total energy + Delta-G solvation = -2085.273321 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.65130 -35.20924 -34.09016 -31.83281 -30.88237 -27.56991 -25.18156 -22.34864 -21.57387 -20.15592 -17.18735 -16.29239 -15.93354 -14.84561 -14.31909 -13.69164 -13.58878 -12.96067 -12.66821 -12.42918 -12.31612 -11.63846 -10.84057 -10.68852 -10.63542 -10.15371 -10.08229 -9.03900 -8.45738 -7.92344 -7.71004 -6.32160 -4.17228 2.14674 3.25932 3.33272 3.44069 3.46480 3.62628 4.51748 4.56832 5.30855 5.35157 5.49359 5.59634 5.83397 5.85447 5.96546 6.30260 6.56944 6.90766 6.98062 7.72113 8.07417 8.31807 8.47541 8.58047 8.89272 9.65310 11.07798 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.060459 B = 0.011798 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.013335 B = 2372.688392 C = 2514.014404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.141 3.859 3 N -0.483 5.483 4 C -0.082 4.082 5 C -0.010 4.010 6 C 0.282 3.718 7 H 0.065 0.935 8 N -0.827 5.827 9 C -0.616 4.616 10 H 0.049 0.951 11 C 0.041 3.959 12 N -0.885 5.885 13 Si 1.071 2.929 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.283 1.283 17 O -0.201 6.201 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.092 0.908 21 H 0.175 0.825 22 H 0.306 0.694 23 H 0.334 0.666 24 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 3.558 1.507 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.065 4.065 3 N -0.214 5.214 4 C -0.220 4.220 5 C -0.066 4.066 6 C 0.172 3.828 7 H 0.082 0.918 8 N -0.354 5.354 9 C -0.655 4.655 10 H 0.067 0.933 11 C -0.169 4.169 12 N -0.518 5.518 13 Si 0.899 3.101 14 H -0.214 1.214 15 H -0.216 1.216 16 H -0.209 1.209 17 O -0.087 6.087 18 H 0.103 0.897 19 H 0.100 0.900 20 H 0.111 0.889 21 H 0.192 0.808 22 H 0.116 0.884 23 H 0.146 0.854 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.183 2.933 0.406 7.770 hybrid contribution -1.716 0.871 1.027 2.181 sum -8.899 3.804 1.433 9.784 Atomic orbital electron populations 1.20050 0.82307 1.04139 1.03902 1.26038 0.96267 0.79547 1.04683 1.70239 1.02515 1.30614 1.18009 1.22911 0.94334 0.93659 1.11096 1.26015 0.84294 0.96826 0.99459 1.18262 0.83741 0.85495 0.95265 0.91795 1.59339 1.48206 1.24187 1.03625 1.21666 1.16341 1.36610 0.90840 0.93290 1.25699 0.92274 0.93641 1.05292 1.70554 1.37354 1.40882 1.03012 0.83534 0.76380 0.76074 0.74085 1.21424 1.21620 1.20863 1.84371 1.17250 1.37360 1.69750 0.89744 0.90046 0.88940 0.80758 0.88366 0.85372 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 36.01 0.38 -0.19 14 2 C 0.14 2.65 8.34 -12.94 -0.11 2.54 14 3 N -0.48 -9.92 11.29 -11.10 -0.13 -10.05 14 4 C -0.08 -1.75 11.80 -17.77 -0.21 -1.96 14 5 C -0.01 -0.22 6.12 -35.69 -0.22 -0.44 14 6 C 0.28 7.00 2.70 -70.02 -0.19 6.81 14 7 H 0.06 1.64 8.00 -51.93 -0.42 1.22 14 8 N -0.83 -19.01 7.79 -6.65 -0.05 -19.06 14 9 C -0.62 -17.22 8.71 -34.44 -0.30 -17.52 14 10 H 0.05 1.42 7.74 -52.49 -0.41 1.01 14 11 C 0.04 1.16 5.39 -17.82 -0.10 1.07 14 12 N -0.88 -26.12 13.50 55.43 0.75 -25.37 14 13 Si 1.07 25.07 29.90 -169.99 -5.08 19.99 14 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 14 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 14 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 14 17 O -0.20 -4.32 10.71 5.35 0.06 -4.26 14 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 14 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 14 20 H 0.09 0.97 8.14 -51.93 -0.42 0.54 14 21 H 0.18 3.36 8.06 -52.48 -0.42 2.94 14 22 H 0.31 6.16 9.06 -39.29 -0.36 5.80 14 23 H 0.33 7.62 8.92 -39.29 -0.35 7.27 14 24 H 0.29 8.49 6.40 -40.82 -0.26 8.23 14 LS Contribution 220.69 15.07 3.33 3.33 Total: -1.00 -31.50 220.69 -4.15 -35.65 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.28 Total: 9.48 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.74 Total: -9.70 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.57 Total: -54.48 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.06 Total: -4.26 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.50 -4.15 -35.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533025.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.859 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds