Wall clock time and date at job start Mon Mar 30 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30258 * 125.61778 * 2 1 4 4 C 1.34477 * 108.69525 * 179.97438 * 3 2 1 5 5 C 1.34326 * 107.67294 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44278 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47607 * 20.00712 * 6 5 4 8 8 N 1.46901 * 109.47110 * 140.00293 * 6 5 4 9 9 C 1.50702 * 109.47465 * 259.99916 * 6 5 4 10 10 H 1.08002 * 119.99441 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00075 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00481 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99886 * 179.73007 * 11 9 6 14 14 H 1.48502 * 109.46964 * 270.27509 * 13 11 9 15 15 H 1.48505 * 109.47036 * 30.26897 * 13 11 9 16 16 H 1.48490 * 109.47395 * 150.27411 * 13 11 9 17 17 O 1.33968 * 125.61561 * 180.27652 * 2 1 3 18 18 H 1.09003 * 109.46690 * 90.03092 * 1 2 3 19 19 H 1.08996 * 109.47284 * 210.02981 * 1 2 3 20 20 H 1.09000 * 109.46898 * 330.03242 * 1 2 3 21 21 H 1.08007 * 126.16146 * 180.02562 * 4 3 2 22 22 H 1.00908 * 111.00077 * 296.04383 * 8 6 5 23 23 H 1.00905 * 111.00224 * 59.99512 * 8 6 5 24 24 H 0.97005 * 119.99656 * 359.72741 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0015 6 6 4.7937 -1.5549 0.0029 7 1 5.6519 -0.9825 0.3547 8 7 4.5717 -2.7017 0.8938 9 6 5.0587 -2.0494 -1.3958 10 1 4.4063 -1.7559 -2.2049 11 6 6.1339 -2.8764 -1.6424 12 7 6.9287 -3.2333 -0.6572 13 14 6.4581 -3.4954 -3.3749 14 1 5.7351 -4.7751 -3.5866 15 1 5.9811 -2.4891 -4.3574 16 1 7.9153 -3.7140 -3.5579 17 8 2.2872 -1.0891 -0.0053 18 1 -0.3633 -0.0006 -1.0277 19 1 -0.3633 -0.8897 0.5143 20 1 -0.3633 0.8903 0.5133 21 1 4.4157 1.3162 0.0011 22 1 4.4556 -2.4000 1.8497 23 1 3.7806 -3.2488 0.5887 24 1 6.7606 -2.9116 0.2423 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259533025.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:09 Heat of formation + Delta-G solvation = -14.285866 kcal Electronic energy + Delta-G solvation = -10785.230504 eV Core-core repulsion = 8698.851718 eV Total energy + Delta-G solvation = -2086.378785 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.26270 -37.14096 -35.70827 -33.66927 -32.43155 -29.17416 -27.10965 -24.18934 -23.21066 -21.82645 -19.19154 -17.90917 -17.58348 -16.71916 -16.10995 -15.54319 -15.02204 -14.48636 -14.27180 -13.86991 -13.65595 -13.27788 -12.80645 -12.54374 -12.28475 -11.93104 -11.74216 -11.03169 -10.57850 -9.73782 -9.45208 -8.51206 -6.39182 0.54012 1.54955 1.62663 1.66422 1.78509 1.82087 2.58339 3.19033 3.20867 3.98554 4.01897 4.16085 4.44859 4.60761 4.64777 4.76563 5.00341 5.14351 5.43983 5.69287 6.01583 6.41188 6.63179 6.73474 6.84620 7.50331 8.86723 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.060459 B = 0.011798 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.013335 B = 2372.688392 C = 2514.014404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.159 3.841 3 N -0.506 5.506 4 C -0.079 4.079 5 C -0.042 4.042 6 C 0.286 3.714 7 H 0.049 0.951 8 N -0.829 5.829 9 C -0.628 4.628 10 H 0.032 0.968 11 C -0.003 4.003 12 N -0.908 5.908 13 Si 1.115 2.885 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.278 1.278 17 O -0.213 6.213 18 H 0.106 0.894 19 H 0.105 0.895 20 H 0.115 0.885 21 H 0.187 0.813 22 H 0.323 0.677 23 H 0.334 0.666 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 3.697 1.083 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.048 4.048 3 N -0.236 5.236 4 C -0.216 4.216 5 C -0.098 4.098 6 C 0.176 3.824 7 H 0.066 0.934 8 N -0.357 5.357 9 C -0.667 4.667 10 H 0.050 0.950 11 C -0.207 4.207 12 N -0.542 5.542 13 Si 0.938 3.062 14 H -0.202 1.202 15 H -0.205 1.205 16 H -0.204 1.204 17 O -0.101 6.101 18 H 0.124 0.876 19 H 0.123 0.877 20 H 0.133 0.867 21 H 0.204 0.796 22 H 0.135 0.865 23 H 0.147 0.853 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.687 3.094 0.001 9.221 hybrid contribution -1.395 0.905 1.210 2.056 sum -10.082 3.998 1.211 10.913 Atomic orbital electron populations 1.20484 0.77630 1.06444 1.05936 1.27500 0.98387 0.78328 1.00626 1.70313 1.02128 1.31270 1.19901 1.23178 0.95416 0.93438 1.09597 1.25491 0.84532 0.96896 1.02857 1.17868 0.84561 0.85915 0.94063 0.93361 1.59135 1.48318 1.23819 1.04428 1.21899 1.16074 1.36591 0.92101 0.94955 1.27011 0.92036 0.93580 1.08116 1.70662 1.38268 1.42234 1.03049 0.82950 0.76616 0.76281 0.70350 1.20160 1.20521 1.20371 1.84356 1.16963 1.38541 1.70238 0.87614 0.87675 0.86673 0.79624 0.86543 0.85336 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.51 71.24 0.75 -0.24 14 2 C 0.16 5.59 8.34 88.34 0.74 6.32 14 3 N -0.51 -19.97 11.29 -303.82 -3.43 -23.41 14 4 C -0.08 -3.34 11.80 83.39 0.98 -2.36 14 5 C -0.04 -1.92 6.12 24.79 0.15 -1.77 14 6 C 0.29 14.38 2.70 43.42 0.12 14.50 14 7 H 0.05 2.55 8.00 -2.39 -0.02 2.53 14 8 N -0.83 -38.34 7.79 -174.95 -1.36 -39.71 14 9 C -0.63 -35.46 8.71 25.60 0.22 -35.24 14 10 H 0.03 1.88 7.74 -2.91 -0.02 1.86 14 11 C 0.00 -0.14 5.39 84.65 0.46 0.31 14 12 N -0.91 -53.96 13.50 21.45 0.29 -53.67 14 13 Si 1.12 50.15 29.90 68.60 2.05 52.20 14 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 14 15 H -0.28 -11.97 7.11 99.48 0.71 -11.27 14 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 14 17 O -0.21 -8.94 10.71 -3.77 -0.04 -8.98 14 18 H 0.11 1.83 8.14 -2.39 -0.02 1.81 14 19 H 0.10 1.72 8.14 -2.39 -0.02 1.70 14 20 H 0.11 1.91 8.14 -2.39 -0.02 1.89 14 21 H 0.19 7.14 8.06 -2.91 -0.02 7.12 14 22 H 0.32 12.98 9.06 -89.69 -0.81 12.17 14 23 H 0.33 15.28 8.92 -89.69 -0.80 14.48 14 24 H 0.28 16.71 6.40 -92.70 -0.59 16.12 14 Total: -1.00 -66.95 220.69 0.72 -66.23 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.21 Total: 25.80 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.42 Total: -18.46 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -4.50 Total: -116.79 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.04 Total: -8.98 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -66.95 0.72 -66.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533025.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.945 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds