Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30937 * 125.13763 * 2 1 4 4 C 1.33399 * 110.05486 * 180.24948 * 3 2 1 5 5 O 1.35618 * 126.29130 * 179.76930 * 4 3 2 6 6 C 1.40324 * 107.42157 * 359.75434 * 4 3 2 7 7 C 1.39806 * 127.10910 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00059 * 132.35722 * 7 6 4 9 9 C 1.39980 * 119.99775 * 312.36111 * 7 6 4 10 10 N 1.30973 * 119.99728 * 168.11343 * 9 7 6 11 11 Si 1.86795 * 119.99987 * 348.11693 * 9 7 6 12 12 H 1.48500 * 109.47069 * 96.00513 * 11 9 7 13 13 H 1.48501 * 109.47077 * 216.00598 * 11 9 7 14 14 H 1.48498 * 109.47032 * 336.00413 * 11 9 7 15 15 N 1.35719 * 125.13363 * 179.81373 * 2 1 3 16 16 C 1.46495 * 126.49676 * 0.02562 * 15 2 1 17 17 H 1.09004 * 109.46594 * 270.18839 * 1 2 3 18 18 H 1.08998 * 109.47031 * 30.19083 * 1 2 3 19 19 H 1.08998 * 109.47129 * 150.18917 * 1 2 3 20 20 H 0.96706 * 113.99754 * 276.85477 * 5 4 3 21 21 H 0.96997 * 120.00157 * 180.02562 * 10 9 7 22 22 H 1.09000 * 109.46936 * 269.68741 * 16 15 2 23 23 H 1.09006 * 109.47515 * 29.68647 * 16 15 2 24 24 H 1.08999 * 109.47482 * 149.68877 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2606 1.0708 0.0000 4 6 3.5486 0.7236 -0.0055 5 8 4.6081 1.5702 -0.0115 6 6 3.6059 -0.6784 -0.0034 7 6 4.7543 -1.4757 -0.0080 8 1 4.8421 -2.3002 0.6841 9 6 5.7904 -1.2053 -0.9095 10 7 6.9529 -1.7914 -0.7661 11 14 5.5152 -0.0085 -2.3171 12 1 6.0093 1.3364 -1.9270 13 1 6.2528 -0.4780 -3.5174 14 1 4.0646 0.0674 -2.6258 15 7 2.2880 -1.1099 0.0036 16 6 1.8264 -2.5002 0.0076 17 1 -0.3633 0.0034 1.0277 18 1 -0.3633 0.8883 -0.5168 19 1 -0.3633 -0.8917 -0.5109 20 1 4.8455 1.8969 -0.8902 21 1 7.6710 -1.6038 -1.3905 22 1 1.7168 -2.8437 1.0363 23 1 0.8647 -2.5653 -0.5015 24 1 2.5540 -3.1262 -0.5089 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259836306.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = 14.012008 kcal Electronic energy + Delta-G solvation = -11116.257821 eV Core-core repulsion = 9031.106123 eV Total energy + Delta-G solvation = -2085.151697 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.42427 -35.97504 -33.48011 -32.40748 -30.64978 -27.94910 -25.79950 -23.18253 -20.18116 -18.80669 -17.89386 -16.46758 -15.68689 -14.70276 -14.18793 -13.65568 -12.98423 -12.83285 -12.66816 -12.34089 -11.83708 -11.63547 -11.24905 -10.88202 -10.77986 -10.38336 -9.98258 -9.23161 -8.50245 -8.31872 -6.87942 -6.69362 -4.45484 2.91138 3.07251 3.22797 3.32722 3.83956 4.01192 4.05615 4.96989 5.15474 5.51460 5.69462 5.80856 5.84675 6.05887 6.10944 6.29924 6.71441 7.18605 7.38550 7.61890 7.99335 8.33405 8.66864 8.87591 9.05575 9.36081 10.30348 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.048692 B = 0.019124 C = 0.016000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.908168 B = 1463.812451 C = 1749.629179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.126 3.874 3 N -0.489 5.489 4 C 0.043 3.957 5 O -0.448 6.448 6 C 0.177 3.823 7 C -0.461 4.461 8 H 0.089 0.911 9 C 0.106 3.894 10 N -0.830 5.830 11 Si 0.899 3.101 12 H -0.261 1.261 13 H -0.286 1.286 14 H -0.256 1.256 15 N -0.483 5.483 16 C 0.092 3.908 17 H 0.060 0.940 18 H 0.074 0.926 19 H 0.060 0.940 20 H 0.345 0.655 21 H 0.282 0.718 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -0.946 -2.628 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 N -0.217 5.217 4 C -0.126 4.126 5 O -0.252 6.252 6 C 0.062 3.938 7 C -0.497 4.497 8 H 0.107 0.893 9 C -0.111 4.111 10 N -0.458 5.458 11 Si 0.727 3.273 12 H -0.188 1.188 13 H -0.212 1.212 14 H -0.180 1.180 15 N -0.174 5.174 16 C -0.051 4.051 17 H 0.079 0.921 18 H 0.093 0.907 19 H 0.079 0.921 20 H 0.199 0.801 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.859 -0.387 -2.064 8.135 hybrid contribution 0.428 -0.209 -1.063 1.165 sum -7.431 -0.596 -3.127 8.084 Atomic orbital electron populations 1.19865 0.86922 1.02186 1.01629 1.22231 0.94024 0.81295 1.15510 1.69053 1.03630 1.29712 1.19274 1.18553 0.84604 0.86426 1.23038 1.85045 1.44558 1.63420 1.32203 1.18913 0.83339 0.92468 0.99061 1.17873 0.96399 1.15930 1.19468 0.89275 1.25609 0.93416 0.94400 0.97667 1.69642 1.02156 1.38999 1.34992 0.86574 0.80138 0.80629 0.80001 1.18841 1.21236 1.18009 1.45577 1.06954 1.05894 1.59024 1.21611 1.00212 0.81453 1.01843 0.92099 0.90710 0.92148 0.80059 0.90755 0.92455 0.91166 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.18 36.01 0.37 -0.38 14 2 C 0.13 2.82 7.89 -154.43 -1.22 1.60 14 3 N -0.49 -12.75 11.18 -9.70 -0.11 -12.86 14 4 C 0.04 1.19 6.88 -16.09 -0.11 1.08 14 5 O -0.45 -12.10 12.43 -18.55 -0.23 -12.33 14 6 C 0.18 4.75 5.51 -83.40 -0.46 4.29 14 7 C -0.46 -12.93 9.39 -38.34 -0.36 -13.29 14 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 14 9 C 0.11 2.89 5.48 -17.27 -0.09 2.80 14 10 N -0.83 -22.96 13.94 55.55 0.77 -22.19 14 11 Si 0.90 21.30 24.16 -169.99 -4.11 17.19 14 12 H -0.26 -5.86 5.71 56.52 0.32 -5.54 14 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 14 14 H -0.26 -6.35 6.95 56.52 0.39 -5.96 14 15 N -0.48 -11.06 3.22 -117.97 -0.38 -11.44 14 16 C 0.09 1.57 10.81 59.84 0.65 2.22 14 17 H 0.06 0.87 8.14 -51.93 -0.42 0.45 14 18 H 0.07 1.12 8.14 -51.93 -0.42 0.69 14 19 H 0.06 0.79 7.03 -51.93 -0.37 0.43 14 20 H 0.34 8.28 5.39 45.56 0.25 8.53 14 21 H 0.28 7.11 8.30 -40.82 -0.34 6.77 14 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 14 23 H 0.07 0.94 7.01 -51.93 -0.36 0.58 14 24 H 0.08 1.45 7.91 -51.93 -0.41 1.04 14 LS Contribution 208.96 15.07 3.15 3.15 Total: -1.00 -32.64 208.96 -3.94 -36.58 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -1.81 Total: 3.58 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.23 Total: -1.68 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.29 Total: -46.48 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.23 Total: -12.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.11 Total: 17.19 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -32.64 -3.94 -36.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836306.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.590 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds