Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30937 * 125.13763 * 2 1 4 4 C 1.33399 * 110.05486 * 180.24948 * 3 2 1 5 5 O 1.35618 * 126.29130 * 179.76930 * 4 3 2 6 6 C 1.40324 * 107.42157 * 359.75434 * 4 3 2 7 7 C 1.39806 * 127.10910 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00059 * 132.35722 * 7 6 4 9 9 C 1.39980 * 119.99775 * 312.36111 * 7 6 4 10 10 N 1.30973 * 119.99728 * 168.11343 * 9 7 6 11 11 Si 1.86795 * 119.99987 * 348.11693 * 9 7 6 12 12 H 1.48500 * 109.47069 * 96.00513 * 11 9 7 13 13 H 1.48501 * 109.47077 * 216.00598 * 11 9 7 14 14 H 1.48498 * 109.47032 * 336.00413 * 11 9 7 15 15 N 1.35719 * 125.13363 * 179.81373 * 2 1 3 16 16 C 1.46495 * 126.49676 * 0.02562 * 15 2 1 17 17 H 1.09004 * 109.46594 * 270.18839 * 1 2 3 18 18 H 1.08998 * 109.47031 * 30.19083 * 1 2 3 19 19 H 1.08998 * 109.47129 * 150.18917 * 1 2 3 20 20 H 0.96706 * 113.99754 * 276.85477 * 5 4 3 21 21 H 0.96997 * 120.00157 * 180.02562 * 10 9 7 22 22 H 1.09000 * 109.46936 * 269.68741 * 16 15 2 23 23 H 1.09006 * 109.47515 * 29.68647 * 16 15 2 24 24 H 1.08999 * 109.47482 * 149.68877 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2606 1.0708 0.0000 4 6 3.5486 0.7236 -0.0055 5 8 4.6081 1.5702 -0.0115 6 6 3.6059 -0.6784 -0.0034 7 6 4.7543 -1.4757 -0.0080 8 1 4.8421 -2.3002 0.6841 9 6 5.7904 -1.2053 -0.9095 10 7 6.9529 -1.7914 -0.7661 11 14 5.5152 -0.0085 -2.3171 12 1 6.0093 1.3364 -1.9270 13 1 6.2528 -0.4780 -3.5174 14 1 4.0646 0.0674 -2.6258 15 7 2.2880 -1.1099 0.0036 16 6 1.8264 -2.5002 0.0076 17 1 -0.3633 0.0034 1.0277 18 1 -0.3633 0.8883 -0.5168 19 1 -0.3633 -0.8917 -0.5109 20 1 4.8455 1.8969 -0.8902 21 1 7.6710 -1.6038 -1.3905 22 1 1.7168 -2.8437 1.0363 23 1 0.8647 -2.5653 -0.5015 24 1 2.5540 -3.1262 -0.5089 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259836306.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -12.852210 kcal Electronic energy + Delta-G solvation = -11117.422741 eV Core-core repulsion = 9031.106123 eV Total energy + Delta-G solvation = -2086.316617 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.29292 -37.98630 -35.48283 -34.19467 -32.33579 -29.66773 -27.42169 -25.07641 -22.15496 -20.55011 -19.90155 -18.42624 -17.57087 -16.43914 -16.05667 -15.52670 -14.72557 -14.69734 -14.03142 -13.87729 -13.40912 -13.16565 -12.92085 -12.76837 -12.57329 -12.28382 -11.89450 -11.21683 -10.46451 -10.14809 -8.86672 -8.70737 -6.54042 1.03606 1.15561 1.35988 1.42308 2.04680 2.13962 2.20965 2.91479 3.38303 4.15027 4.23199 4.41770 4.51315 4.76640 4.88451 4.96251 5.12369 5.23766 5.46301 5.72885 6.03331 6.24556 6.73066 6.92035 7.07901 7.45412 8.31731 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.048692 B = 0.019124 C = 0.016000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.908168 B = 1463.812451 C = 1749.629179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.154 3.846 3 N -0.530 5.530 4 C 0.020 3.980 5 O -0.463 6.463 6 C 0.147 3.853 7 C -0.483 4.483 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.866 5.866 11 Si 0.951 3.049 12 H -0.246 1.246 13 H -0.266 1.266 14 H -0.273 1.273 15 N -0.485 5.485 16 C 0.082 3.918 17 H 0.085 0.915 18 H 0.086 0.914 19 H 0.097 0.903 20 H 0.354 0.646 21 H 0.291 0.709 22 H 0.075 0.925 23 H 0.117 0.883 24 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -0.828 -3.372 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 N -0.258 5.258 4 C -0.148 4.148 5 O -0.269 6.269 6 C 0.031 3.969 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.496 5.496 11 Si 0.776 3.224 12 H -0.172 1.172 13 H -0.191 1.191 14 H -0.198 1.198 15 N -0.175 5.175 16 C -0.059 4.059 17 H 0.103 0.897 18 H 0.105 0.895 19 H 0.116 0.884 20 H 0.210 0.790 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.135 0.865 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.156 -0.298 -2.806 10.540 hybrid contribution 0.947 -0.275 -0.762 1.246 sum -9.209 -0.573 -3.568 9.893 Atomic orbital electron populations 1.20194 0.81810 1.04671 1.03950 1.23651 0.96573 0.80261 1.10077 1.69114 1.03165 1.31413 1.22087 1.18922 0.85337 0.86830 1.23700 1.84980 1.45004 1.63636 1.33233 1.18828 0.84700 0.92286 1.01044 1.17816 0.98106 1.15909 1.20048 0.92207 1.26288 0.93053 0.95799 0.99454 1.69681 1.02947 1.40598 1.36396 0.85762 0.79054 0.79581 0.77961 1.17241 1.19131 1.19758 1.45875 1.05753 1.08273 1.57573 1.22020 1.01955 0.78249 1.03644 0.89673 0.89506 0.88445 0.78964 0.89899 0.90643 0.86474 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.27 10.18 71.24 0.73 -0.54 14 2 C 0.15 6.43 7.89 137.78 1.09 7.51 14 3 N -0.53 -26.83 11.18 -296.91 -3.32 -30.15 14 4 C 0.02 1.08 6.88 84.96 0.58 1.66 14 5 O -0.46 -25.11 12.43 -89.29 -1.11 -26.22 14 6 C 0.15 7.94 5.51 38.95 0.21 8.16 14 7 C -0.48 -27.85 9.39 23.07 0.22 -27.64 14 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 14 9 C 0.07 3.74 5.48 85.24 0.47 4.21 14 10 N -0.87 -49.00 13.94 21.85 0.30 -48.70 14 11 Si 0.95 44.01 24.16 68.60 1.66 45.67 14 12 H -0.25 -10.62 5.71 99.48 0.57 -10.05 14 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 14 14 H -0.27 -13.25 6.95 99.48 0.69 -12.56 14 15 N -0.49 -21.25 3.22 -527.14 -1.70 -22.95 14 16 C 0.08 2.57 10.81 127.77 1.38 3.95 14 17 H 0.08 1.95 8.14 -2.38 -0.02 1.93 14 18 H 0.09 2.16 8.14 -2.39 -0.02 2.14 14 19 H 0.10 1.90 7.03 -2.39 -0.02 1.88 14 20 H 0.35 16.92 5.39 -74.05 -0.40 16.52 14 21 H 0.29 14.85 8.30 -92.71 -0.77 14.08 14 22 H 0.08 2.10 8.14 -2.39 -0.02 2.09 14 23 H 0.12 2.53 7.01 -2.38 -0.02 2.51 14 24 H 0.07 2.47 7.91 -2.39 -0.02 2.45 14 Total: -1.00 -72.16 208.96 1.18 -70.99 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.66 Total: 14.05 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.68 Total: -2.69 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -4.71 Total: -101.79 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.11 Total: -26.22 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.66 Total: 45.67 kcal Total: -72.16 1.18 -70.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836306.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.136 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds