Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46847 * 2 1 4 4 H 1.09000 * 110.50351 * 307.72975 * 3 2 1 5 5 C 1.51561 * 110.68946 * 70.55424 * 3 2 1 6 6 O 1.21290 * 127.14146 * 298.67117 * 5 3 2 7 7 N 1.34786 * 105.71536 * 118.63190 * 5 3 2 8 8 N 1.39181 * 111.43067 * 359.76981 * 7 5 3 9 9 C 1.31431 * 112.35373 * 0.42115 * 8 7 5 10 10 C 1.39104 * 126.64988 * 179.86478 * 9 8 7 11 11 H 1.07993 * 120.00046 * 185.72548 * 10 9 8 12 12 C 1.40591 * 119.99527 * 5.72221 * 10 9 8 13 13 N 1.30553 * 119.99374 * 184.43930 * 12 10 9 14 14 Si 1.86799 * 120.00132 * 4.43502 * 12 10 9 15 15 H 1.48506 * 109.46976 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47081 * 60.00268 * 14 12 10 17 17 H 1.48496 * 109.47254 * 299.99861 * 14 12 10 18 18 H 1.09002 * 109.46903 * 300.00196 * 1 2 3 19 19 H 1.08997 * 109.47465 * 59.99744 * 1 2 3 20 20 H 1.09000 * 109.47232 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46903 * 239.99804 * 2 1 3 22 22 H 1.08993 * 109.46883 * 119.99815 * 2 1 3 23 23 H 0.96994 * 124.28026 * 179.97438 * 7 5 3 24 24 H 0.97001 * 120.00690 * 354.86321 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5782 2.0107 -0.8075 5 6 1.7734 2.1047 1.3370 6 8 0.6943 2.3003 1.8551 7 7 2.9844 2.4303 1.8310 8 7 4.0059 2.0486 0.9662 9 6 3.5492 1.4731 -0.1236 10 6 4.3056 0.9819 -1.1827 11 1 3.8149 0.6110 -2.0704 12 6 5.7088 0.9682 -1.0973 13 7 6.4215 0.5887 -2.1232 14 14 6.5535 1.4933 0.4839 15 1 8.0255 1.3901 0.3166 16 1 6.1180 0.6094 1.5949 17 1 6.1887 2.8983 0.7971 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.1262 2.8719 2.6829 24 1 5.9835 0.2456 -2.9178 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259851513.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -22.679067 kcal Electronic energy + Delta-G solvation = -10971.131542 eV Core-core repulsion = 8884.388800 eV Total energy + Delta-G solvation = -2086.742742 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80728 -36.20811 -33.88264 -33.45310 -30.26797 -27.00354 -25.67670 -22.19162 -20.17455 -19.38144 -17.63862 -16.64334 -15.20673 -14.52095 -14.09656 -13.76209 -13.00705 -12.68109 -12.37201 -12.25340 -11.66669 -11.42380 -11.00616 -10.61273 -10.33630 -10.23638 -9.88848 -9.32436 -9.12390 -8.14348 -7.91315 -7.41370 -4.98737 2.83352 3.42154 3.45628 3.79869 3.92396 4.15766 4.45955 4.96240 5.15829 5.40025 5.53275 5.73952 5.99379 6.11817 6.31340 6.38340 6.60445 6.71521 6.92225 7.32428 7.63339 7.92772 8.14661 8.47417 9.02967 9.45758 9.87793 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052608 B = 0.016497 C = 0.013230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.115232 B = 1696.863493 C = 2115.823250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.130 4.130 4 H 0.106 0.894 5 C 0.484 3.516 6 O -0.562 6.562 7 N -0.556 5.556 8 N -0.453 5.453 9 C 0.205 3.795 10 C -0.459 4.459 11 H 0.088 0.912 12 C 0.055 3.945 13 N -0.797 5.797 14 Si 1.112 2.888 15 H -0.311 1.311 16 H -0.278 1.278 17 H -0.260 1.260 18 H 0.068 0.932 19 H 0.050 0.950 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.412 0.588 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -0.993 1.464 3.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.124 4.124 3 C -0.154 4.154 4 H 0.123 0.877 5 C 0.269 3.731 6 O -0.442 6.442 7 N -0.294 5.294 8 N -0.285 5.285 9 C 0.049 3.951 10 C -0.500 4.500 11 H 0.106 0.894 12 C -0.169 4.169 13 N -0.420 5.420 14 Si 0.940 3.060 15 H -0.241 1.241 16 H -0.205 1.205 17 H -0.186 1.186 18 H 0.087 0.913 19 H 0.069 0.931 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.253 0.747 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.898 -0.373 2.791 3.396 hybrid contribution -2.267 -0.300 -0.892 2.455 sum -4.166 -0.673 1.899 4.627 Atomic orbital electron populations 1.21874 0.95791 1.00943 1.02736 1.21096 0.95341 0.93271 1.02662 1.21491 0.98114 0.98574 0.97200 0.87654 1.21288 0.84394 0.79575 0.87830 1.90611 1.26552 1.59409 1.67644 1.47147 1.04294 1.56856 1.21146 1.75691 1.09341 1.36648 1.06825 1.21486 0.89833 0.91075 0.92753 1.19727 0.93212 1.36403 1.00641 0.89388 1.27639 0.94611 0.90908 1.03748 1.70547 1.40901 1.26402 1.04155 0.82692 0.71588 0.80095 0.71578 1.24069 1.20469 1.18615 0.91345 0.93076 0.93216 0.90665 0.92256 0.74738 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.77 37.16 0.36 -2.21 14 2 C -0.09 -1.61 5.42 -26.73 -0.14 -1.75 14 3 C -0.13 -2.80 2.96 -92.13 -0.27 -3.07 14 4 H 0.11 2.16 8.14 -51.93 -0.42 1.74 14 5 C 0.48 10.97 8.04 -10.56 -0.08 10.88 14 6 O -0.56 -13.41 16.41 5.55 0.09 -13.32 14 7 N -0.56 -12.46 7.10 31.45 0.22 -12.24 14 8 N -0.45 -11.15 7.66 33.80 0.26 -10.89 14 9 C 0.20 4.95 6.12 -82.07 -0.50 4.45 14 10 C -0.46 -11.39 9.65 -38.37 -0.37 -11.76 14 11 H 0.09 2.13 8.06 -52.49 -0.42 1.70 14 12 C 0.06 1.39 5.53 -17.21 -0.10 1.30 14 13 N -0.80 -20.17 13.64 55.58 0.76 -19.41 14 14 Si 1.11 25.79 25.94 -169.99 -4.41 21.38 14 15 H -0.31 -7.05 7.11 56.52 0.40 -6.65 14 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 17 H -0.26 -6.13 6.77 56.52 0.38 -5.75 14 18 H 0.07 1.25 6.42 -51.93 -0.33 0.92 14 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 14 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 14 21 H 0.07 1.36 8.03 -51.93 -0.42 0.94 14 22 H 0.06 1.15 8.12 -51.93 -0.42 0.73 14 23 H 0.41 8.03 8.96 -183.29 -1.64 6.39 14 24 H 0.29 6.88 8.72 -40.82 -0.36 6.52 14 LS Contribution 211.96 15.07 3.19 3.19 Total: -1.00 -27.73 211.96 -4.67 -32.40 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.68 Total: 1.06 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.11 Total: -2.16 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 1.24 Total: -42.54 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.41 Total: 21.38 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -27.73 -4.67 -32.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851513.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.720 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds