Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47500 * 2 1 4 4 H 1.09002 * 110.49720 * 52.26367 * 3 2 1 5 5 C 1.51560 * 110.55784 * 289.37672 * 3 2 1 6 6 O 1.21299 * 127.14769 * 61.45244 * 5 3 2 7 7 N 1.34779 * 105.71463 * 241.42000 * 5 3 2 8 8 N 1.39183 * 111.43577 * 359.76680 * 7 5 3 9 9 C 1.31437 * 112.34467 * 0.42567 * 8 7 5 10 10 C 1.39105 * 126.64760 * 179.86692 * 9 8 7 11 11 H 1.07999 * 120.00108 * 179.68611 * 10 9 8 12 12 C 1.40584 * 119.99771 * 359.68041 * 10 9 8 13 13 N 1.30560 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47118 * 90.00083 * 14 12 10 16 16 H 1.48499 * 109.47293 * 210.00087 * 14 12 10 17 17 H 1.48504 * 109.47104 * 330.00332 * 14 12 10 18 18 H 1.08998 * 109.47094 * 300.00281 * 1 2 3 19 19 H 1.09003 * 109.47037 * 60.00117 * 1 2 3 20 20 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47094 * 239.99719 * 2 1 3 22 22 H 1.09003 * 109.47037 * 119.99882 * 2 1 3 23 23 H 0.97002 * 124.28328 * 180.02562 * 7 5 3 24 24 H 0.96996 * 119.99949 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5782 2.0107 0.8074 5 6 1.7736 2.1012 -1.3387 6 8 0.6945 2.2968 -1.8570 7 7 2.9847 2.4253 -1.8335 8 7 4.0056 2.0551 -0.9630 9 6 3.5492 1.4730 0.1235 10 6 4.3054 0.9852 1.1843 11 1 3.8157 0.5282 2.0314 12 6 5.7072 1.0869 1.1534 13 7 6.2993 1.6398 0.1295 14 14 6.7229 0.4312 2.5775 15 1 7.0688 -0.9908 2.3253 16 1 7.9691 1.2286 2.7052 17 1 5.9381 0.5344 3.8340 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.1266 2.8647 -2.6866 24 1 7.2665 1.7103 0.1084 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259851515.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = -11.235514 kcal Electronic energy + Delta-G solvation = -10888.607510 eV Core-core repulsion = 8802.360998 eV Total energy + Delta-G solvation = -2086.246512 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.49172 -35.90452 -33.59343 -33.27835 -29.69870 -26.60285 -25.91604 -21.99401 -20.20071 -19.21301 -16.53728 -16.31583 -15.04139 -14.87147 -13.92383 -13.67101 -13.04759 -12.48361 -12.14504 -11.76934 -11.39400 -11.06338 -10.94573 -10.81573 -10.60221 -10.27903 -10.23995 -9.32320 -9.06086 -7.94577 -7.51839 -6.67788 -4.68050 2.90900 3.06624 3.09324 3.29406 3.89280 4.11061 4.50318 5.15645 5.37668 5.61959 5.70119 5.91907 6.18311 6.32031 6.48441 6.51055 6.77603 6.86540 7.01335 7.29488 7.90721 8.14775 8.54798 8.78638 9.29901 9.95319 10.23087 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.057854 B = 0.013779 C = 0.011459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.858427 B = 2031.518207 C = 2442.891352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 C -0.133 4.133 4 H 0.102 0.898 5 C 0.475 3.525 6 O -0.572 6.572 7 N -0.572 5.572 8 N -0.356 5.356 9 C 0.200 3.800 10 C -0.418 4.418 11 H 0.090 0.910 12 C 0.070 3.930 13 N -0.735 5.735 14 Si 0.915 3.085 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.261 1.261 18 H 0.049 0.951 19 H 0.067 0.933 20 H 0.046 0.954 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.408 0.592 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 -2.894 3.217 4.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.122 4.122 3 C -0.157 4.157 4 H 0.120 0.880 5 C 0.260 3.740 6 O -0.453 6.453 7 N -0.308 5.308 8 N -0.182 5.182 9 C 0.037 3.963 10 C -0.458 4.458 11 H 0.108 0.892 12 C -0.155 4.155 13 N -0.360 5.360 14 Si 0.739 3.261 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.184 1.184 18 H 0.068 0.932 19 H 0.086 0.914 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.248 0.752 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.249 -2.408 2.322 3.570 hybrid contribution -0.090 -0.204 0.533 0.578 sum -1.339 -2.612 2.855 4.095 Atomic orbital electron populations 1.21883 0.96132 1.00697 1.02669 1.21073 0.95025 0.93695 1.02447 1.21520 0.99050 0.98151 0.96952 0.87988 1.21517 0.84713 0.79710 0.88063 1.90580 1.27008 1.59748 1.67949 1.47919 1.05097 1.56545 1.21283 1.77480 1.05127 1.31067 1.04550 1.21342 0.87939 0.93405 0.93611 1.18441 0.90540 1.34418 1.02408 0.89188 1.26045 0.98461 0.94188 0.96850 1.69819 1.11080 1.28100 1.27022 0.86197 0.79149 0.79405 0.81347 1.19382 1.20191 1.18441 0.93159 0.91424 0.93441 0.92480 0.90746 0.75199 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.77 37.16 0.36 -2.32 14 2 C -0.08 -1.63 5.41 -26.73 -0.14 -1.78 14 3 C -0.13 -3.00 2.97 -92.13 -0.27 -3.27 14 4 H 0.10 2.19 8.14 -51.93 -0.42 1.77 14 5 C 0.47 11.49 8.03 -10.56 -0.08 11.40 14 6 O -0.57 -14.47 16.40 5.54 0.09 -14.38 14 7 N -0.57 -13.90 7.10 31.45 0.22 -13.68 14 8 N -0.36 -9.60 10.60 33.80 0.36 -9.24 14 9 C 0.20 5.09 6.37 -82.07 -0.52 4.57 14 10 C -0.42 -10.29 9.22 -38.38 -0.35 -10.65 14 11 H 0.09 2.01 7.86 -52.49 -0.41 1.59 14 12 C 0.07 1.68 5.51 -17.21 -0.09 1.59 14 13 N -0.73 -18.91 11.94 55.58 0.66 -18.25 14 14 Si 0.91 17.55 29.57 -169.99 -5.03 12.52 14 15 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 16 H -0.28 -5.27 7.11 56.52 0.40 -4.87 14 17 H -0.26 -4.86 7.11 56.52 0.40 -4.46 14 18 H 0.05 0.80 8.14 -51.93 -0.42 0.37 14 19 H 0.07 1.30 6.42 -51.93 -0.33 0.97 14 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 14 21 H 0.06 1.16 8.12 -51.93 -0.42 0.74 14 22 H 0.07 1.35 8.03 -51.93 -0.42 0.93 14 23 H 0.41 8.85 8.96 -183.28 -1.64 7.21 14 24 H 0.28 6.52 8.29 -40.82 -0.34 6.18 14 LS Contribution 216.31 15.07 3.26 3.26 Total: -1.00 -29.05 216.31 -5.17 -34.22 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.63 Total: 6.01 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.11 Total: -0.46 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 1.25 Total: -41.16 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.05 -5.17 -34.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851515.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.981 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds