Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35148 * 116.99817 * 2 1 4 4 N 1.31710 * 125.31667 * 359.97438 * 3 2 1 5 5 C 1.32965 * 110.01828 * 180.02562 * 4 3 2 6 6 C 1.39615 * 107.73100 * 359.97438 * 5 4 3 7 7 C 1.39947 * 126.98960 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99490 * 180.02562 * 7 6 5 9 9 C 1.39948 * 120.00001 * 0.03043 * 7 6 5 10 10 N 1.30956 * 120.00309 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99629 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47139 * 59.99920 * 11 9 7 13 13 H 1.48500 * 109.47091 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47138 * 299.99520 * 11 9 7 15 15 N 1.36046 * 125.31182 * 179.97438 * 3 2 1 16 16 C 1.46501 * 126.56886 * 359.97438 * 15 3 2 17 17 H 1.08999 * 109.47113 * 59.99969 * 1 2 3 18 18 H 1.09004 * 109.46863 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47538 * 299.99899 * 1 2 3 20 20 H 1.08004 * 126.12871 * 180.26446 * 5 4 3 21 21 H 0.97003 * 120.00031 * 180.02562 * 10 9 7 22 22 H 1.09001 * 109.46878 * 269.99642 * 16 15 3 23 23 H 1.08994 * 109.47152 * 29.99743 * 16 15 3 24 24 H 1.09002 * 109.47270 * 149.99910 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0425 1.2042 0.0000 4 7 1.4305 2.3705 -0.0005 5 6 2.3254 3.3540 -0.0009 6 6 3.5951 2.7736 0.0000 7 6 4.8257 3.4402 -0.0006 8 1 5.7460 2.8749 -0.0003 9 6 4.8636 4.8391 -0.0015 10 7 3.7478 5.5245 -0.0024 11 14 6.5062 5.7288 -0.0016 12 1 7.2753 5.3482 -1.2135 13 1 6.2747 7.1956 -0.0032 14 1 7.2744 5.3499 1.2115 15 7 3.3886 1.4009 0.0005 16 6 4.4224 0.3629 0.0016 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 2.1087 4.4121 0.0027 21 1 3.7741 6.4942 -0.0034 22 1 4.6784 0.1062 1.0296 23 1 4.0485 -0.5229 -0.5117 24 1 5.3097 0.7331 -0.5120 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259862960.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -2.639782 kcal Electronic energy + Delta-G solvation = -10861.091900 eV Core-core repulsion = 8775.218127 eV Total energy + Delta-G solvation = -2085.873773 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.92530 -38.75226 -35.45144 -34.42435 -30.46055 -28.35978 -27.27767 -26.11028 -21.98462 -21.28190 -19.09284 -18.02399 -17.13041 -17.04505 -16.24372 -15.30530 -15.28053 -14.26729 -14.16995 -13.44092 -13.23705 -13.06842 -12.88538 -12.60429 -12.42802 -11.96048 -11.86102 -11.08355 -10.35119 -10.12592 -8.71822 -8.50348 -6.19659 1.32146 1.44135 1.57829 1.73477 1.83436 2.28199 2.67692 3.21562 3.36004 4.22218 4.46192 4.48352 4.52991 4.58897 4.67734 4.82191 5.15803 5.46312 5.67503 5.71787 6.17848 6.50536 6.90436 6.96656 7.25959 7.82244 8.47395 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.078342 B = 0.012335 C = 0.010740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.321904 B = 2269.491448 C = 2606.367439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.318 6.318 3 C 0.266 3.734 4 N -0.536 5.536 5 C -0.169 4.169 6 C 0.154 3.846 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.024 3.976 10 N -0.835 5.835 11 Si 1.008 2.992 12 H -0.259 1.259 13 H -0.270 1.270 14 H -0.259 1.259 15 N -0.498 5.498 16 C 0.094 3.906 17 H 0.042 0.958 18 H 0.135 0.865 19 H 0.042 0.958 20 H 0.173 0.827 21 H 0.287 0.713 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -5.607 -0.079 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.226 6.226 3 C -0.028 4.028 4 N -0.271 5.271 5 C -0.313 4.313 6 C 0.045 3.955 7 C -0.500 4.500 8 H 0.104 0.896 9 C -0.189 4.189 10 N -0.463 5.463 11 Si 0.828 3.172 12 H -0.183 1.183 13 H -0.195 1.195 14 H -0.183 1.183 15 N -0.199 5.199 16 C -0.048 4.048 17 H 0.061 0.939 18 H 0.153 0.847 19 H 0.061 0.939 20 H 0.189 0.811 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.106 0.894 24 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.664 -5.678 -0.080 5.917 hybrid contribution 0.915 0.432 0.020 1.012 sum 2.579 -5.245 -0.060 5.845 Atomic orbital electron populations 1.22898 0.75294 1.04254 1.01219 1.85525 1.23741 1.21490 1.91818 1.20209 0.81722 0.86290 1.14563 1.69590 1.35297 0.97700 1.24481 1.23056 0.87638 0.97527 1.23093 1.19198 0.96973 0.78763 1.00561 1.18653 0.91008 0.92182 1.48206 0.89647 1.26759 1.02529 0.97542 0.92023 1.69735 1.30060 1.09018 1.37521 0.84860 0.75716 0.76718 0.79907 1.18310 1.19457 1.18341 1.44873 1.04108 1.07132 1.63774 1.21800 0.90426 0.89647 1.02896 0.93889 0.84679 0.93905 0.81072 0.90254 0.91309 0.89426 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.96 10.64 113.37 1.21 3.17 14 2 O -0.32 -13.76 10.46 -84.26 -0.88 -14.64 14 3 C 0.27 13.88 8.49 179.59 1.52 15.40 14 4 N -0.54 -30.78 10.53 -310.59 -3.27 -34.05 14 5 C -0.17 -10.25 10.87 84.85 0.92 -9.33 14 6 C 0.15 8.87 6.74 38.78 0.26 9.13 14 7 C -0.47 -25.04 9.05 23.10 0.21 -24.83 14 8 H 0.09 4.18 7.31 -2.91 -0.02 4.16 14 9 C 0.02 1.24 5.50 85.24 0.47 1.70 14 10 N -0.84 -44.90 10.33 21.84 0.23 -44.68 14 11 Si 1.01 37.87 29.56 68.60 2.03 39.90 14 12 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 13 H -0.27 -9.71 7.11 99.48 0.71 -9.00 14 14 H -0.26 -9.33 7.11 99.48 0.71 -8.63 14 15 N -0.50 -25.35 3.23 -654.27 -2.12 -27.46 14 16 C 0.09 3.54 10.95 127.77 1.40 4.94 14 17 H 0.04 1.48 8.14 -2.39 -0.02 1.46 14 18 H 0.14 3.08 8.14 -2.39 -0.02 3.06 14 19 H 0.04 1.48 8.14 -2.39 -0.02 1.46 14 20 H 0.17 10.81 5.75 -2.91 -0.02 10.79 14 21 H 0.29 13.90 8.30 -92.71 -0.77 13.13 14 22 H 0.07 2.34 8.14 -2.39 -0.02 2.32 14 23 H 0.09 2.87 8.14 -2.39 -0.02 2.85 14 24 H 0.08 2.96 7.52 -2.39 -0.02 2.95 14 Total: -1.00 -67.97 217.25 3.18 -64.79 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.20 Total: 15.95 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.99 Total: 0.19 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -5.16 Total: -106.18 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.88 Total: -14.64 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -67.97 3.18 -64.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862960.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.149 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds