Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.37188 * 120.00013 * 180.02562 * 2 1 3 5 5 N 1.31816 * 125.26058 * 359.69447 * 4 2 1 6 6 C 1.33201 * 109.16717 * 179.86399 * 5 4 2 7 7 C 1.39461 * 107.23897 * 0.39078 * 6 5 4 8 8 C 1.39721 * 126.78822 * 179.80204 * 7 6 5 9 9 H 1.08007 * 119.99567 * 359.97438 * 8 7 6 10 10 C 1.39985 * 120.00201 * 179.97438 * 8 7 6 11 11 N 1.30954 * 119.99982 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00255 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46788 * 89.99924 * 12 10 8 14 14 H 1.48503 * 109.47515 * 210.00139 * 12 10 8 15 15 H 1.48502 * 109.47317 * 330.00457 * 12 10 8 16 16 O 1.34333 * 125.26247 * 179.97438 * 4 2 1 17 17 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 18 18 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 19 19 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 20 20 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 21 21 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 22 22 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 23 23 H 1.07998 * 126.38082 * 180.13333 * 6 5 4 24 24 H 0.97006 * 120.00112 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1509 -1.1881 -0.0005 5 7 1.5993 -2.3853 0.0047 6 6 2.5590 -3.3090 -0.0007 7 6 3.7804 -2.6360 -0.0007 8 6 5.0533 -3.2122 -0.0016 9 1 5.1594 -4.2871 -0.0019 10 6 6.1909 -2.3966 -0.0020 11 7 6.0622 -1.0934 -0.0011 12 14 7.8926 -3.1670 -0.0024 13 1 8.3431 -3.3713 -1.4027 14 1 8.8440 -2.2666 0.6972 15 1 7.8438 -4.4757 0.6977 16 8 3.4886 -1.3113 -0.0011 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 0.8900 0.5139 19 1 -0.3633 -0.8900 0.5139 20 1 1.4892 2.0973 0.0005 21 1 2.8242 1.3264 0.8899 22 1 2.8241 1.3265 -0.8900 23 1 2.4175 -4.3797 -0.0004 24 1 6.8506 -0.5281 -0.0010 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886509.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = 22.765741 kcal Electronic energy + Delta-G solvation = -10863.058331 eV Core-core repulsion = 8778.286224 eV Total energy + Delta-G solvation = -2084.772107 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.77087 -35.83655 -33.57232 -32.52219 -29.00102 -27.46042 -25.68163 -23.06910 -20.31929 -19.54904 -17.33237 -16.23743 -15.09881 -15.06176 -14.33680 -13.59598 -13.47110 -12.63422 -12.07824 -12.02306 -11.71918 -11.40428 -11.33455 -11.08745 -10.70685 -10.31034 -9.71838 -9.37465 -8.60904 -8.45575 -6.82125 -6.64709 -4.19920 2.90291 3.04434 3.09217 3.55668 3.60461 3.88999 4.44405 5.15047 5.24476 5.59182 5.81639 5.95010 6.22761 6.26411 6.32000 6.68133 6.99218 7.08351 7.48053 7.79227 7.93671 8.29731 8.62698 8.67737 8.83556 9.87319 10.18664 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.071654 B = 0.012564 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.670669 B = 2228.071229 C = 2598.294402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.600 5.600 3 C 0.117 3.883 4 C 0.309 3.691 5 N -0.508 5.508 6 C -0.225 4.225 7 C 0.159 3.841 8 C -0.437 4.437 9 H 0.105 0.895 10 C 0.064 3.936 11 N -0.788 5.788 12 Si 0.924 3.076 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.260 1.260 16 O -0.194 6.194 17 H 0.034 0.966 18 H 0.055 0.945 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.148 0.852 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 3.560 0.127 3.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.332 5.332 3 C -0.027 4.027 4 C 0.016 3.984 5 N -0.245 5.245 6 C -0.366 4.366 7 C 0.104 3.896 8 C -0.468 4.468 9 H 0.123 0.877 10 C -0.155 4.155 11 N -0.414 5.414 12 Si 0.748 3.252 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.183 1.183 16 O -0.081 6.081 17 H 0.053 0.947 18 H 0.074 0.926 19 H 0.089 0.911 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.165 0.835 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.343 3.786 0.140 4.454 hybrid contribution 1.588 -0.096 -0.033 1.591 sum -0.755 3.690 0.107 3.768 Atomic orbital electron populations 1.21259 0.78065 1.01723 1.00147 1.43925 1.03817 1.00141 1.85303 1.21337 0.95938 0.84031 1.01415 1.20732 0.79278 0.87409 1.10975 1.69633 1.34184 0.96897 1.23812 1.22476 0.87349 0.97421 1.29340 1.20297 0.95328 0.77627 0.96321 1.18562 0.86819 0.94722 1.46693 0.87670 1.26084 1.02097 0.94718 0.92559 1.69837 1.32444 1.04393 1.34770 0.86049 0.80019 0.79892 0.79279 1.19287 1.20137 1.18338 1.84727 1.20998 1.28165 1.74251 0.94724 0.92644 0.91134 0.91713 0.93434 0.93426 0.83485 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.24 10.52 59.85 0.63 2.87 14 2 N -0.60 -13.02 3.34 -191.95 -0.64 -13.66 14 3 C 0.12 2.12 10.50 59.85 0.63 2.74 14 4 C 0.31 8.30 8.39 -87.28 -0.73 7.57 14 5 N -0.51 -14.02 10.48 -13.55 -0.14 -14.16 14 6 C -0.22 -6.29 11.98 -16.50 -0.20 -6.48 14 7 C 0.16 4.66 6.82 -38.57 -0.26 4.40 14 8 C -0.44 -12.04 9.33 -38.37 -0.36 -12.40 14 9 H 0.11 2.67 7.85 -52.48 -0.41 2.26 14 10 C 0.06 1.67 5.50 -17.27 -0.09 1.58 14 11 N -0.79 -21.39 12.05 55.55 0.67 -20.72 14 12 Si 0.92 18.86 29.56 -169.99 -5.03 13.83 14 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 14 H -0.28 -5.50 7.11 56.52 0.40 -5.10 14 15 H -0.26 -5.16 7.11 56.52 0.40 -4.75 14 16 O -0.19 -5.72 8.83 1.75 0.02 -5.70 14 17 H 0.03 0.56 8.14 -51.93 -0.42 0.13 14 18 H 0.05 0.73 7.92 -51.93 -0.41 0.32 14 19 H 0.07 1.29 7.60 -51.93 -0.39 0.90 14 20 H 0.06 0.88 7.79 -51.93 -0.40 0.47 14 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 14 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 14 23 H 0.15 3.74 8.06 -52.49 -0.42 3.31 14 24 H 0.28 6.88 8.30 -40.82 -0.34 6.54 14 LS Contribution 220.57 15.07 3.32 3.32 Total: -1.00 -32.11 220.57 -4.64 -36.74 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -2.45 Total: 0.07 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.39 Total: 0.28 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.11 Total: -48.54 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: 0.02 Total: -5.70 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -32.11 -4.64 -36.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886509.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.507 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds