Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.37188 * 120.00013 * 180.02562 * 2 1 3 5 5 N 1.31816 * 125.26058 * 359.69447 * 4 2 1 6 6 C 1.33201 * 109.16717 * 179.86399 * 5 4 2 7 7 C 1.39461 * 107.23897 * 0.39078 * 6 5 4 8 8 C 1.39721 * 126.78822 * 179.80204 * 7 6 5 9 9 H 1.08007 * 119.99567 * 359.97438 * 8 7 6 10 10 C 1.39985 * 120.00201 * 179.97438 * 8 7 6 11 11 N 1.30954 * 119.99982 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00255 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46788 * 89.99924 * 12 10 8 14 14 H 1.48503 * 109.47515 * 210.00139 * 12 10 8 15 15 H 1.48502 * 109.47317 * 330.00457 * 12 10 8 16 16 O 1.34333 * 125.26247 * 179.97438 * 4 2 1 17 17 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 18 18 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 19 19 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 20 20 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 21 21 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 22 22 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 23 23 H 1.07998 * 126.38082 * 180.13333 * 6 5 4 24 24 H 0.97006 * 120.00112 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1509 -1.1881 -0.0005 5 7 1.5993 -2.3853 0.0047 6 6 2.5590 -3.3090 -0.0007 7 6 3.7804 -2.6360 -0.0007 8 6 5.0533 -3.2122 -0.0016 9 1 5.1594 -4.2871 -0.0019 10 6 6.1909 -2.3966 -0.0020 11 7 6.0622 -1.0934 -0.0011 12 14 7.8926 -3.1670 -0.0024 13 1 8.3431 -3.3713 -1.4027 14 1 8.8440 -2.2666 0.6972 15 1 7.8438 -4.4757 0.6977 16 8 3.4886 -1.3113 -0.0011 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 0.8900 0.5139 19 1 -0.3633 -0.8900 0.5139 20 1 1.4892 2.0973 0.0005 21 1 2.8242 1.3264 0.8899 22 1 2.8241 1.3265 -0.8900 23 1 2.4175 -4.3797 -0.0004 24 1 6.8506 -0.5281 -0.0010 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259886509.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -0.793436 kcal Electronic energy + Delta-G solvation = -10864.079933 eV Core-core repulsion = 8778.286224 eV Total energy + Delta-G solvation = -2085.793710 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.87381 -37.51898 -35.55918 -34.64006 -31.05355 -28.90523 -27.52923 -24.92899 -22.42551 -21.48832 -19.41322 -18.09001 -17.02678 -16.94572 -16.02411 -15.42653 -15.17475 -14.48139 -13.94039 -13.43487 -13.26085 -13.00686 -12.99885 -12.81540 -12.64301 -12.00968 -11.70821 -11.35778 -10.72445 -10.33529 -8.77476 -8.61674 -6.26772 1.15391 1.38603 1.55685 1.71006 1.81884 2.18011 2.37395 3.16552 3.23827 4.22043 4.50735 4.53240 4.67415 4.82057 4.87545 4.97599 4.99810 5.10017 5.48867 5.79925 6.12740 6.27666 6.61623 6.63913 6.84191 7.78082 8.26123 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.071654 B = 0.012564 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.670669 B = 2228.071229 C = 2598.294402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.602 5.602 3 C 0.115 3.885 4 C 0.304 3.696 5 N -0.525 5.525 6 C -0.247 4.247 7 C 0.124 3.876 8 C -0.466 4.466 9 H 0.118 0.882 10 C 0.018 3.982 11 N -0.824 5.824 12 Si 1.009 2.991 13 H -0.258 1.258 14 H -0.266 1.266 15 H -0.249 1.249 16 O -0.217 6.217 17 H 0.047 0.953 18 H 0.104 0.896 19 H 0.052 0.948 20 H 0.120 0.880 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.162 0.838 24 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 4.194 0.153 4.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.335 5.335 3 C -0.028 4.028 4 C 0.010 3.990 5 N -0.264 5.264 6 C -0.387 4.387 7 C 0.069 3.931 8 C -0.496 4.496 9 H 0.136 0.864 10 C -0.198 4.198 11 N -0.451 5.451 12 Si 0.828 3.172 13 H -0.183 1.183 14 H -0.190 1.190 15 H -0.172 1.172 16 O -0.106 6.106 17 H 0.065 0.935 18 H 0.122 0.878 19 H 0.071 0.929 20 H 0.139 0.861 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.179 0.821 24 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.828 4.429 0.165 4.795 hybrid contribution 1.321 -0.184 -0.044 1.335 sum -0.507 4.245 0.121 4.277 Atomic orbital electron populations 1.21557 0.75377 1.03259 1.01404 1.44586 1.05489 0.99301 1.84102 1.21531 0.97075 0.84167 1.00042 1.21612 0.78883 0.89227 1.09260 1.69624 1.34045 0.97265 1.25438 1.22767 0.87387 0.98289 1.30222 1.20850 0.96602 0.77898 0.97703 1.19052 0.87250 0.95781 1.47536 0.86407 1.27209 1.06568 0.94962 0.91012 1.69915 1.34452 1.06123 1.34594 0.84790 0.73496 0.79158 0.79786 1.18287 1.19046 1.17238 1.84692 1.22423 1.28528 1.74950 0.93481 0.87800 0.92888 0.86131 0.94764 0.94868 0.82111 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.97 10.52 127.77 1.34 5.31 14 2 N -0.60 -25.43 3.34 -872.14 -2.91 -28.34 14 3 C 0.11 3.96 10.50 127.77 1.34 5.30 14 4 C 0.30 16.55 8.39 179.18 1.50 18.06 14 5 N -0.53 -29.50 10.48 -310.59 -3.26 -32.76 14 6 C -0.25 -14.18 11.98 84.78 1.02 -13.16 14 7 C 0.12 7.47 6.82 22.92 0.16 7.62 14 8 C -0.47 -26.03 9.33 23.05 0.22 -25.82 14 9 H 0.12 6.01 7.85 -2.91 -0.02 5.99 14 10 C 0.02 0.94 5.50 85.25 0.47 1.41 14 11 N -0.82 -45.01 12.05 21.85 0.26 -44.75 14 12 Si 1.01 37.79 29.56 68.60 2.03 39.82 14 13 H -0.26 -9.25 7.11 99.48 0.71 -8.55 14 14 H -0.27 -9.45 7.11 99.48 0.71 -8.74 14 15 H -0.25 -8.84 7.11 99.48 0.71 -8.14 14 16 O -0.22 -13.14 8.83 -16.66 -0.15 -13.29 14 17 H 0.05 1.39 8.14 -2.39 -0.02 1.37 14 18 H 0.10 2.30 7.92 -2.39 -0.02 2.28 14 19 H 0.05 1.87 7.60 -2.38 -0.02 1.86 14 20 H 0.12 2.77 7.79 -2.39 -0.02 2.75 14 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 14 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 14 23 H 0.16 8.39 8.06 -2.91 -0.02 8.36 14 24 H 0.29 14.21 8.30 -92.70 -0.77 13.44 14 Total: -1.00 -70.74 220.57 3.21 -67.52 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.19 Total: 13.08 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.04 Total: -1.29 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -5.91 Total: -105.85 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.15 Total: -13.29 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -70.74 3.21 -67.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886509.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.732 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds