Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47253 * 2 1 4 4 N 1.29951 * 125.30453 * 270.00223 * 3 2 1 5 5 O 1.41883 * 107.41512 * 179.97438 * 4 3 2 6 6 N 1.41876 * 106.38514 * 359.78273 * 5 4 3 7 7 C 1.29953 * 107.41361 * 0.36513 * 6 5 4 8 8 C 1.50700 * 125.30089 * 179.89846 * 7 6 5 9 9 C 1.50702 * 109.46869 * 269.69045 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 H 1.08997 * 109.47258 * 299.99710 * 1 2 3 18 18 H 1.08999 * 109.47068 * 60.00086 * 1 2 3 19 19 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46970 * 239.99954 * 2 1 3 21 21 H 1.08999 * 109.46882 * 120.00434 * 2 1 3 22 22 H 1.09004 * 109.47210 * 149.69338 * 8 7 6 23 23 H 1.08994 * 109.47551 * 29.68990 * 8 7 6 24 24 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2827 2.1288 -1.0605 5 8 2.7322 3.4020 -0.6247 6 7 2.7146 3.3687 0.7936 7 6 2.3033 2.1886 1.1498 8 6 2.1358 1.7171 2.5713 9 6 3.4196 1.0863 3.0458 10 1 4.2716 1.0326 2.3844 11 6 3.5083 0.5833 4.3266 12 7 2.4709 0.6491 5.1322 13 14 5.1020 -0.1916 4.9172 14 1 5.9608 0.8512 5.5339 15 1 4.7990 -1.2415 5.9228 16 1 5.8133 -0.8007 3.7647 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 1.3313 0.9831 2.6183 23 1 1.8907 2.5662 3.2093 24 1 2.5332 0.2949 6.0331 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905618.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 47.756805 kcal Electronic energy + Delta-G solvation = -10673.533747 eV Core-core repulsion = 8589.845334 eV Total energy + Delta-G solvation = -2083.688413 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.37956 -36.40483 -35.42544 -33.96622 -31.99064 -30.29982 -26.00987 -25.36673 -22.62778 -21.31571 -18.69241 -17.76934 -16.84807 -16.60898 -15.77614 -15.25971 -14.69560 -14.44965 -13.92832 -13.68879 -13.25493 -12.96909 -12.71188 -12.63452 -12.27648 -12.10401 -12.03629 -11.80145 -11.61388 -11.16151 -10.65045 -8.28502 -6.41396 -0.41048 1.12303 1.43725 1.46387 1.55948 1.76292 2.29879 2.40833 3.03780 3.10737 3.90035 4.07914 4.31670 4.46052 4.51374 4.85074 5.00527 5.09386 5.15404 5.25791 5.36784 5.62521 5.94967 6.08175 6.65040 7.28011 8.82241 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.045524 B = 0.012671 C = 0.011378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.915741 B = 2209.172143 C = 2460.283410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C 0.101 3.899 4 N -0.303 5.303 5 O -0.024 6.024 6 N -0.320 5.320 7 C 0.110 3.890 8 C 0.085 3.915 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.025 3.975 12 N -0.915 5.915 13 Si 0.963 3.037 14 H -0.280 1.280 15 H -0.273 1.273 16 H -0.265 1.265 17 H 0.052 0.948 18 H 0.058 0.942 19 H 0.099 0.901 20 H 0.110 0.890 21 H 0.107 0.893 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -4.782 -6.095 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.082 4.082 4 N -0.051 5.051 5 O -0.156 6.156 6 N -0.069 5.069 7 C -0.072 4.072 8 C 0.047 3.953 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.553 5.553 13 Si 0.788 3.212 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.189 1.189 17 H 0.071 0.929 18 H 0.077 0.923 19 H 0.118 0.882 20 H 0.129 0.871 21 H 0.125 0.875 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.472 -3.641 -6.811 8.109 hybrid contribution 0.651 -0.417 0.944 1.221 sum -1.821 -4.058 -5.866 7.362 Atomic orbital electron populations 1.21733 0.91526 1.04550 1.02123 1.20579 0.98231 0.84597 1.06435 1.25160 0.94282 1.00832 0.87903 1.79703 1.13028 0.91996 1.20417 1.93252 1.78909 1.28599 1.14855 1.79921 1.17407 1.19430 0.90095 1.25467 0.91366 0.89107 1.01255 1.17989 0.99011 0.96808 0.81494 1.21026 0.97543 1.40238 0.99063 0.92979 1.25683 0.99943 0.95805 0.96201 1.70010 1.31367 1.45872 1.08027 0.85465 0.79082 0.78242 0.78421 1.20544 1.19831 1.18939 0.92916 0.92260 0.88185 0.87133 0.87508 0.91822 0.95878 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.89 71.98 0.71 -2.51 14 2 C -0.06 -1.65 6.10 29.85 0.18 -1.47 14 3 C 0.10 3.77 6.44 43.48 0.28 4.05 14 4 N -0.30 -11.94 12.98 -47.17 -0.61 -12.55 14 5 O -0.02 -1.06 13.71 70.15 0.96 -0.10 14 6 N -0.32 -14.99 12.98 -47.16 -0.61 -15.60 14 7 C 0.11 4.86 6.38 43.49 0.28 5.14 14 8 C 0.09 4.11 5.14 29.10 0.15 4.26 14 9 C -0.54 -28.15 9.09 25.60 0.23 -27.92 14 10 H 0.05 2.74 7.74 -2.91 -0.02 2.72 14 11 C 0.02 1.28 5.46 84.66 0.46 1.74 14 12 N -0.91 -49.53 13.29 21.45 0.28 -49.25 14 13 Si 0.96 40.93 29.54 68.60 2.03 42.95 14 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 14 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 14 16 H -0.27 -10.90 7.11 99.48 0.71 -10.20 14 17 H 0.05 1.34 8.14 -2.39 -0.02 1.32 14 18 H 0.06 1.30 8.14 -2.39 -0.02 1.28 14 19 H 0.10 1.71 8.14 -2.39 -0.02 1.69 14 20 H 0.11 2.50 8.14 -2.39 -0.02 2.49 14 21 H 0.11 3.11 7.78 -2.39 -0.02 3.10 14 22 H 0.06 2.93 7.78 -2.38 -0.02 2.91 14 23 H 0.02 1.21 8.14 -2.39 -0.02 1.20 14 24 H 0.27 13.80 8.31 -92.70 -0.77 13.03 14 Total: -1.00 -58.90 224.63 5.54 -53.36 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: 1.19 Total: -2.11 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 2.30 Total: -16.71 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -0.94 Total: -77.40 kcal Atomic # 8 Polarization: -1.06 SS G_CDS: 0.96 Total: -0.10 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -58.90 5.54 -53.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905618.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.122 kcal (2) G-P(sol) polarization free energy of solvation -58.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds