Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46833 * 2 1 4 4 C 1.50706 * 109.47074 * 119.99293 * 2 1 3 5 5 H 1.08004 * 119.99235 * 119.99855 * 4 2 1 6 6 C 1.37871 * 120.00384 * 300.00895 * 4 2 1 7 7 N 1.31512 * 120.00049 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00198 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46960 * 59.99511 * 8 6 4 10 10 H 1.48500 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.46961 * 299.99674 * 8 6 4 12 12 C 1.50695 * 109.47181 * 239.99997 * 2 1 3 13 13 C 1.39870 * 126.03480 * 269.68579 * 12 2 1 14 14 N 1.30839 * 108.20307 * 180.26430 * 13 12 2 15 15 N 1.40087 * 108.20037 * 0.02562 * 14 13 12 16 16 H 0.97006 * 126.03505 * 180.02562 * 15 14 13 17 17 C 1.34939 * 107.93005 * 0.02562 * 15 14 13 18 18 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47643 * 300.00036 * 1 2 3 20 20 H 1.08997 * 109.47118 * 60.00224 * 1 2 3 21 21 H 0.96699 * 113.99964 * 179.97438 * 3 2 1 22 22 H 0.96996 * 120.00426 * 180.02562 * 7 6 4 23 23 H 1.08001 * 125.90246 * 0.26835 * 13 12 2 24 24 H 1.07999 * 126.13245 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.8062 -1.1206 4.0083 10 1 1.8267 -0.4197 5.2205 11 1 1.8258 -2.5199 4.0079 12 6 2.0323 -0.7104 -1.2304 13 6 2.3125 -2.0767 -1.3349 14 7 2.7310 -2.3163 -2.5512 15 7 2.7309 -1.1079 -3.2599 16 1 2.9947 -0.9894 -4.1859 17 6 2.2991 -0.1379 -2.4271 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 2.9702 1.4237 0.0004 22 1 0.7092 1.1618 3.4843 23 1 2.2023 -2.8079 -0.5477 24 1 2.1852 0.9077 -2.6722 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915698.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = 1.384722 kcal Electronic energy + Delta-G solvation = -11028.701762 eV Core-core repulsion = 8943.002505 eV Total energy + Delta-G solvation = -2085.699258 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.92925 -37.84627 -34.20879 -32.58750 -31.63364 -29.32944 -27.21039 -23.33981 -22.56241 -20.53720 -18.89572 -18.51772 -16.60542 -16.21046 -15.44566 -15.17273 -14.85228 -14.23548 -13.45249 -13.18445 -12.92292 -12.80078 -12.56790 -12.32244 -12.04715 -11.90600 -10.79083 -10.50815 -10.38750 -10.15926 -9.16721 -7.94890 -6.19494 1.10158 1.47981 1.48658 1.55588 2.05578 2.22913 2.49497 3.26577 4.05345 4.21336 4.39173 4.80944 4.97419 5.10159 5.21427 5.30477 5.65288 5.80595 5.87559 6.11742 6.36779 6.61756 6.81702 6.94613 7.47824 7.71768 9.03636 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.057036 B = 0.014667 C = 0.012843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.799026 B = 1908.612486 C = 2179.708753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.309 3.691 3 O -0.573 6.573 4 C -0.563 4.563 5 H 0.056 0.944 6 C 0.035 3.965 7 N -0.889 5.889 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.252 4.252 13 C 0.055 3.945 14 N -0.331 5.331 15 N -0.472 5.472 16 H 0.450 0.550 17 C 0.062 3.938 18 H 0.039 0.961 19 H 0.061 0.939 20 H 0.025 0.975 21 H 0.356 0.644 22 H 0.257 0.743 23 H 0.178 0.822 24 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -1.483 -7.319 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.269 3.731 3 O -0.377 6.377 4 C -0.601 4.601 5 H 0.074 0.926 6 C -0.168 4.168 7 N -0.526 5.526 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.264 4.264 13 C -0.130 4.130 14 N -0.155 5.155 15 N -0.183 5.183 16 H 0.296 0.704 17 C -0.086 4.086 18 H 0.058 0.942 19 H 0.080 0.920 20 H 0.044 0.956 21 H 0.200 0.800 22 H 0.066 0.934 23 H 0.195 0.805 24 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.182 -2.127 -8.000 8.561 hybrid contribution 0.612 0.161 1.167 1.328 sum 2.794 -1.966 -6.832 7.639 Atomic orbital electron populations 1.21476 0.96237 0.99069 1.00048 1.16973 0.90586 0.78552 0.86970 1.86437 1.24531 1.29660 1.97100 1.21911 1.32923 1.13424 0.91885 0.92597 1.25663 0.94538 0.95104 1.01450 1.70123 1.36063 1.23020 1.23406 0.85823 0.78700 0.78940 0.79293 1.19999 1.21388 1.19659 1.21377 1.12078 0.94796 0.98103 1.23843 0.97856 0.97011 0.94318 1.77120 1.26116 1.05628 1.06601 1.46181 1.53777 1.04721 1.13613 0.70413 1.22576 0.99431 0.96243 0.90306 0.94189 0.92046 0.95623 0.79962 0.93370 0.80500 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.42 8.60 71.98 0.62 -4.80 14 2 C 0.31 15.01 0.93 -12.29 -0.01 15.00 14 3 O -0.57 -28.09 12.00 -148.98 -1.79 -29.88 14 4 C -0.56 -29.70 7.92 25.60 0.20 -29.49 14 5 H 0.06 2.89 6.55 -2.91 -0.02 2.87 14 6 C 0.03 1.86 5.24 84.65 0.44 2.31 14 7 N -0.89 -50.38 10.87 21.44 0.23 -50.15 14 8 Si 0.95 42.59 29.54 68.60 2.03 44.61 14 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 14 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 14 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 14 12 C -0.25 -10.43 4.88 -20.15 -0.10 -10.53 14 13 C 0.06 2.21 10.91 85.24 0.93 3.14 14 14 N -0.33 -12.10 12.70 -57.02 -0.72 -12.82 14 15 N -0.47 -13.98 7.36 -57.60 -0.42 -14.40 14 16 H 0.45 9.21 8.96 -213.32 -1.91 7.29 14 17 C 0.06 2.05 11.47 83.54 0.96 3.01 14 18 H 0.04 1.87 8.14 -2.39 -0.02 1.85 14 19 H 0.06 3.35 6.07 -2.39 -0.01 3.34 14 20 H 0.02 1.13 8.14 -2.39 -0.02 1.11 14 21 H 0.36 15.66 9.03 -74.06 -0.67 14.99 14 22 H 0.26 14.03 8.31 -92.71 -0.77 13.26 14 23 H 0.18 6.98 7.44 -2.91 -0.02 6.96 14 24 H 0.20 5.37 8.06 -2.91 -0.02 5.34 14 Total: -1.00 -62.80 214.44 1.02 -61.78 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -1.35 Total: 22.22 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 3.04 Total: -21.37 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -0.91 Total: -77.37 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.79 Total: -29.88 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -62.80 1.02 -61.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915698.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.165 kcal (2) G-P(sol) polarization free energy of solvation -62.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds