Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31130 * 126.54475 * 2 1 4 4 C 1.34500 * 105.61235 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.28817 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47257 * 0.05404 * 5 4 3 7 7 C 1.53001 * 109.47250 * 240.05152 * 5 4 3 8 8 C 1.50704 * 109.47033 * 120.05099 * 5 4 3 9 9 H 1.08004 * 119.99437 * 35.01977 * 8 5 4 10 10 C 1.37868 * 119.99972 * 215.01276 * 8 5 4 11 11 N 1.31520 * 119.99883 * 184.91415 * 10 8 5 12 12 Si 1.86800 * 120.00169 * 4.91778 * 10 8 5 13 13 H 1.48500 * 109.46886 * 84.83379 * 12 10 8 14 14 H 1.48502 * 109.47257 * 204.83211 * 12 10 8 15 15 H 1.48496 * 109.47140 * 324.83450 * 12 10 8 16 16 N 1.29946 * 107.42483 * 0.02562 * 4 3 2 17 17 O 1.21307 * 110.25263 * 359.97438 * 16 4 3 18 18 H 1.09011 * 109.46861 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47375 * 300.01528 * 1 2 3 20 20 H 1.08997 * 109.47501 * 60.02422 * 1 2 3 21 21 H 1.08994 * 109.47070 * 175.02548 * 7 5 4 22 22 H 1.09005 * 109.46923 * 295.02455 * 7 5 4 23 23 H 1.09007 * 109.46644 * 55.02274 * 7 5 4 24 24 H 0.96995 * 120.00015 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2878 1.0535 0.0000 4 6 3.5440 0.5730 0.0006 5 6 4.8111 1.3889 0.0003 6 1 4.5602 2.4496 0.0005 7 6 5.6300 1.0587 -1.2492 8 6 5.6184 1.0635 1.2305 9 1 5.6212 0.0577 1.6240 10 6 6.3534 2.0496 1.8535 11 7 7.1334 1.7466 2.8681 12 14 6.2414 3.8161 1.2565 13 1 5.0736 4.4795 1.8901 14 1 7.4832 4.5426 1.6243 15 1 6.0781 3.8304 -0.2194 16 7 3.4645 -0.7241 0.0003 17 8 2.3029 -1.0736 0.0002 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3634 0.5140 0.8898 20 1 -0.3634 0.5134 -0.8902 21 1 6.5019 1.7112 -1.2951 22 1 5.9559 0.0194 -1.2059 23 1 5.0156 1.2102 -2.1368 24 1 7.6508 2.4403 3.3062 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935487.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = 54.864913 kcal Electronic energy + Delta-G solvation = -10797.208071 eV Core-core repulsion = 8713.827889 eV Total energy + Delta-G solvation = -2083.380182 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.80713 -35.80545 -34.13287 -32.47556 -30.91168 -28.30372 -25.33387 -23.72670 -22.33000 -19.60357 -17.49687 -16.99462 -16.56980 -14.67776 -14.25614 -13.57095 -13.26703 -12.95703 -12.56650 -12.27652 -11.79207 -11.52802 -11.03844 -10.79263 -10.68480 -10.39989 -10.10001 -9.85166 -9.31918 -8.89818 -8.63944 -6.16658 -4.19020 1.85537 3.11326 3.27176 3.33651 3.35443 3.44807 4.34333 4.35788 4.97015 5.25281 5.38457 5.39921 5.53364 5.91520 6.30878 6.35421 6.52632 6.63824 6.83962 6.94952 7.28501 7.55129 8.38521 8.88452 9.03159 9.42168 10.95728 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.057895 B = 0.012629 C = 0.012303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.514365 B = 2216.619772 C = 2275.273651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.144 3.856 3 N -0.490 5.490 4 C 0.217 3.783 5 C 0.091 3.909 6 H 0.060 0.940 7 C -0.133 4.133 8 C -0.513 4.513 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.891 5.891 12 Si 0.876 3.124 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.262 1.262 16 N -0.386 5.386 17 O 0.060 5.940 18 H 0.089 0.911 19 H 0.096 0.904 20 H 0.095 0.905 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.024 0.976 24 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.103 -0.973 -6.346 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 N -0.225 5.225 4 C -0.056 4.056 5 C 0.070 3.930 6 H 0.078 0.922 7 C -0.192 4.192 8 C -0.551 4.551 9 H 0.097 0.903 10 C -0.127 4.127 11 N -0.528 5.528 12 Si 0.702 3.298 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.186 1.186 16 N -0.096 5.096 17 O 0.005 5.995 18 H 0.108 0.892 19 H 0.114 0.886 20 H 0.113 0.887 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.184 -1.012 -6.199 11.965 hybrid contribution -0.130 0.899 -0.057 0.910 sum -10.314 -0.113 -6.256 12.064 Atomic orbital electron populations 1.20195 0.81271 1.04691 1.04912 1.28680 0.98622 0.81982 0.98446 1.71881 1.01194 1.29077 1.20360 1.26611 0.95033 0.88062 0.95848 1.17804 0.84629 0.93725 0.96842 0.92250 1.21970 0.99482 1.01963 0.95742 1.20800 1.26845 0.98427 1.09027 0.90302 1.25016 0.94379 0.98887 0.94372 1.69887 1.26935 1.33861 1.22079 0.86865 0.77896 0.84951 0.80051 1.19738 1.21119 1.18643 1.74576 0.95741 1.16563 1.22696 1.85267 1.12055 1.35799 1.66421 0.89203 0.88580 0.88660 0.92424 0.92705 0.95661 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.01 0.38 -0.13 14 2 C 0.14 2.45 8.51 -13.06 -0.11 2.34 14 3 N -0.49 -10.47 11.55 -9.86 -0.11 -10.58 14 4 C 0.22 5.21 6.71 -156.37 -1.05 4.16 14 5 C 0.09 2.30 2.43 -92.92 -0.23 2.07 14 6 H 0.06 1.50 5.29 -51.93 -0.27 1.22 14 7 C -0.13 -2.99 9.16 37.16 0.34 -2.65 14 8 C -0.51 -14.93 8.84 -34.44 -0.30 -15.23 14 9 H 0.08 2.55 8.06 -52.48 -0.42 2.12 14 10 C 0.08 2.23 5.47 -17.82 -0.10 2.13 14 11 N -0.89 -27.32 13.96 55.43 0.77 -26.55 14 12 Si 0.88 21.50 26.99 -169.99 -4.59 16.91 14 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 14 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 14 15 H -0.26 -6.08 6.82 56.52 0.39 -5.70 14 16 N -0.39 -8.97 12.16 30.90 0.38 -8.60 14 17 O 0.06 1.16 11.31 18.10 0.20 1.36 14 18 H 0.09 0.63 8.14 -51.92 -0.42 0.21 14 19 H 0.10 0.84 8.14 -51.93 -0.42 0.41 14 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 14 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 14 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 14 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 14 24 H 0.27 7.61 8.31 -40.82 -0.34 7.28 14 LS Contribution 219.14 15.07 3.30 3.30 Total: -1.00 -33.04 219.14 -3.50 -36.54 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -2.39 Total: -5.08 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.07 Total: -7.31 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 1.04 Total: -45.73 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.91 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -33.04 -3.50 -36.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935487.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.405 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds