Wall clock time and date at job start Mon Mar 30 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31130 * 126.54475 * 2 1 4 4 C 1.34500 * 105.61235 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.28817 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47257 * 0.05404 * 5 4 3 7 7 C 1.53001 * 109.47250 * 240.05152 * 5 4 3 8 8 C 1.50704 * 109.47033 * 120.05099 * 5 4 3 9 9 H 1.08004 * 119.99437 * 35.01977 * 8 5 4 10 10 C 1.37868 * 119.99972 * 215.01276 * 8 5 4 11 11 N 1.31520 * 119.99883 * 184.91415 * 10 8 5 12 12 Si 1.86800 * 120.00169 * 4.91778 * 10 8 5 13 13 H 1.48500 * 109.46886 * 84.83379 * 12 10 8 14 14 H 1.48502 * 109.47257 * 204.83211 * 12 10 8 15 15 H 1.48496 * 109.47140 * 324.83450 * 12 10 8 16 16 N 1.29946 * 107.42483 * 0.02562 * 4 3 2 17 17 O 1.21307 * 110.25263 * 359.97438 * 16 4 3 18 18 H 1.09011 * 109.46861 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47375 * 300.01528 * 1 2 3 20 20 H 1.08997 * 109.47501 * 60.02422 * 1 2 3 21 21 H 1.08994 * 109.47070 * 175.02548 * 7 5 4 22 22 H 1.09005 * 109.46923 * 295.02455 * 7 5 4 23 23 H 1.09007 * 109.46644 * 55.02274 * 7 5 4 24 24 H 0.96995 * 120.00015 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2878 1.0535 0.0000 4 6 3.5440 0.5730 0.0006 5 6 4.8111 1.3889 0.0003 6 1 4.5602 2.4496 0.0005 7 6 5.6300 1.0587 -1.2492 8 6 5.6184 1.0635 1.2305 9 1 5.6212 0.0577 1.6240 10 6 6.3534 2.0496 1.8535 11 7 7.1334 1.7466 2.8681 12 14 6.2414 3.8161 1.2565 13 1 5.0736 4.4795 1.8901 14 1 7.4832 4.5426 1.6243 15 1 6.0781 3.8304 -0.2194 16 7 3.4645 -0.7241 0.0003 17 8 2.3029 -1.0736 0.0002 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3634 0.5140 0.8898 20 1 -0.3634 0.5134 -0.8902 21 1 6.5019 1.7112 -1.2951 22 1 5.9559 0.0194 -1.2059 23 1 5.0156 1.2102 -2.1368 24 1 7.6508 2.4403 3.3062 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935487.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:33 Heat of formation + Delta-G solvation = 29.353798 kcal Electronic energy + Delta-G solvation = -10798.314316 eV Core-core repulsion = 8713.827889 eV Total energy + Delta-G solvation = -2084.486427 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.44316 -37.57033 -35.83352 -34.29933 -32.74512 -29.51252 -27.40256 -25.53293 -23.93950 -21.35118 -19.27760 -18.91477 -18.29451 -16.65600 -15.61354 -15.44832 -14.60184 -14.26596 -14.10756 -13.88804 -13.61850 -12.96607 -12.85658 -12.67531 -12.37118 -12.07046 -11.90885 -11.80349 -11.34722 -10.82973 -10.59086 -8.39164 -6.48376 0.40280 1.32905 1.34506 1.43751 1.46367 2.17495 2.28550 2.85783 3.01058 3.42983 4.13809 4.47300 4.58246 4.64593 4.70620 4.78573 4.85387 5.04780 5.13246 5.27736 5.42033 5.50376 6.14429 6.56361 7.16796 7.46215 8.77425 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.057895 B = 0.012629 C = 0.012303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.514365 B = 2216.619772 C = 2275.273651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.168 3.832 3 N -0.520 5.520 4 C 0.190 3.810 5 C 0.088 3.912 6 H 0.063 0.937 7 C -0.126 4.126 8 C -0.522 4.522 9 H 0.027 0.973 10 C 0.020 3.980 11 N -0.940 5.940 12 Si 0.945 3.055 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.237 1.237 16 N -0.415 5.415 17 O 0.067 5.933 18 H 0.123 0.877 19 H 0.113 0.887 20 H 0.122 0.878 21 H 0.063 0.937 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 0.142 -7.739 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 N -0.254 5.254 4 C -0.083 4.083 5 C 0.068 3.932 6 H 0.081 0.919 7 C -0.184 4.184 8 C -0.560 4.560 9 H 0.045 0.955 10 C -0.179 4.179 11 N -0.578 5.578 12 Si 0.767 3.233 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.160 1.160 16 N -0.125 5.125 17 O 0.010 5.990 18 H 0.142 0.858 19 H 0.132 0.868 20 H 0.140 0.860 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.277 0.100 -7.608 14.444 hybrid contribution 0.368 0.403 0.412 0.684 sum -11.909 0.503 -7.196 13.923 Atomic orbital electron populations 1.20721 0.75761 1.07640 1.06839 1.30071 1.00763 0.80089 0.94242 1.71840 1.00514 1.30573 1.22501 1.26398 0.95749 0.88439 0.97685 1.17706 0.85289 0.94219 0.95995 0.91865 1.21845 0.99692 1.01306 0.95582 1.20877 1.28026 0.96333 1.10771 0.95501 1.25959 0.93594 1.03991 0.94366 1.70032 1.28228 1.35731 1.23853 0.85769 0.78267 0.78326 0.80948 1.19118 1.20203 1.16008 1.74546 0.97797 1.16623 1.23510 1.85213 1.11271 1.36290 1.66248 0.85850 0.86844 0.86006 0.91828 0.93928 0.92905 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 10.51 71.24 0.75 -0.02 14 2 C 0.17 5.31 8.51 88.38 0.75 6.07 14 3 N -0.52 -21.42 11.55 -303.16 -3.50 -24.92 14 4 C 0.19 9.08 6.71 138.46 0.93 10.01 14 5 C 0.09 4.47 2.43 -12.28 -0.03 4.44 14 6 H 0.06 3.10 5.29 -2.39 -0.01 3.08 14 7 C -0.13 -5.54 9.16 71.98 0.66 -4.88 14 8 C -0.52 -31.33 8.84 25.60 0.23 -31.11 14 9 H 0.03 1.83 8.06 -2.91 -0.02 1.81 14 10 C 0.02 1.16 5.47 84.65 0.46 1.62 14 11 N -0.94 -59.32 13.96 21.44 0.30 -59.02 14 12 Si 0.95 43.96 26.99 68.60 1.85 45.81 14 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 14 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 14 15 H -0.24 -10.00 6.82 99.48 0.68 -9.32 14 16 N -0.41 -19.37 12.16 -60.29 -0.73 -20.10 14 17 O 0.07 2.50 11.31 74.83 0.85 3.34 14 18 H 0.12 1.08 8.14 -2.38 -0.02 1.06 14 19 H 0.11 1.44 8.14 -2.39 -0.02 1.42 14 20 H 0.12 1.32 8.14 -2.39 -0.02 1.30 14 21 H 0.06 2.67 8.14 -2.39 -0.02 2.65 14 22 H 0.04 1.93 8.14 -2.38 -0.02 1.91 14 23 H 0.05 2.01 8.14 -2.38 -0.02 1.99 14 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 14 Total: -1.00 -74.56 219.14 3.68 -70.88 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: 1.17 Total: -2.10 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 3.75 Total: -13.88 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.94 Total: -104.05 kcal Atomic # 8 Polarization: 2.50 SS G_CDS: 0.85 Total: 3.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.85 Total: 45.81 kcal Total: -74.56 3.68 -70.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935487.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.237 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds