Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31136 * 126.54762 * 2 1 4 4 C 1.34497 * 105.60746 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.28373 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47271 * 0.02562 * 5 4 3 7 7 C 1.53001 * 109.46980 * 120.00176 * 5 4 3 8 8 C 1.50692 * 109.47388 * 240.00380 * 5 4 3 9 9 H 1.07999 * 120.00485 * 354.35816 * 8 5 4 10 10 C 1.37878 * 120.00191 * 174.36219 * 8 5 4 11 11 N 1.31517 * 120.00265 * 156.87331 * 10 8 5 12 12 Si 1.86801 * 119.99803 * 336.87646 * 10 8 5 13 13 H 1.48501 * 109.47172 * 180.02562 * 12 10 8 14 14 H 1.48506 * 109.46973 * 299.99670 * 12 10 8 15 15 H 1.48498 * 109.47415 * 59.99501 * 12 10 8 16 16 N 1.29950 * 107.42891 * 0.24461 * 4 3 2 17 17 O 1.21299 * 110.24575 * 359.57745 * 16 4 3 18 18 H 1.08999 * 109.47603 * 89.99616 * 1 2 3 19 19 H 1.09001 * 109.47375 * 210.00397 * 1 2 3 20 20 H 1.09006 * 109.47371 * 330.00183 * 1 2 3 21 21 H 1.09001 * 109.47164 * 53.17783 * 7 5 4 22 22 H 1.08994 * 109.47265 * 173.17755 * 7 5 4 23 23 H 1.09002 * 109.47128 * 293.18506 * 7 5 4 24 24 H 0.96996 * 119.99931 * 354.93241 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5728 -0.0006 5 6 4.8111 1.3886 -0.0014 6 1 4.5603 2.4495 -0.0009 7 6 5.6310 1.0584 1.2475 8 6 5.6174 1.0632 -1.2321 9 1 5.2955 0.2742 -1.8956 10 6 6.7661 1.7728 -1.5113 11 7 7.6970 1.2433 -2.2747 12 14 7.0003 3.4863 -0.8052 13 1 8.3077 4.0312 -1.2515 14 1 5.9072 4.3715 -1.2814 15 1 6.9719 3.4187 0.6779 16 7 3.4644 -0.7242 -0.0062 17 8 2.3028 -1.0735 -0.0006 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5138 21 1 5.7786 -0.0197 1.3107 22 1 6.5995 1.5548 1.1880 23 1 5.0989 1.4048 2.1335 24 1 7.6098 0.3271 -2.5811 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935506.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = 54.464941 kcal Electronic energy + Delta-G solvation = -10804.676939 eV Core-core repulsion = 8721.279412 eV Total energy + Delta-G solvation = -2083.397527 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.86777 -35.85046 -34.22177 -32.56488 -30.76845 -28.34556 -24.95728 -23.67075 -22.34152 -19.59217 -17.63122 -17.27215 -16.75587 -14.43245 -14.27666 -13.46147 -13.30661 -13.06563 -12.71311 -12.22910 -11.60949 -11.50955 -11.12336 -10.69013 -10.52723 -10.40949 -10.00441 -9.83029 -9.26185 -8.91500 -8.26018 -6.54840 -4.13594 1.80433 3.07152 3.38366 3.40032 3.43959 3.60555 4.32115 4.46636 4.99324 5.15877 5.33206 5.35978 5.52571 5.89856 6.31520 6.35463 6.52400 6.62127 6.83541 6.99563 7.33662 7.90625 8.32499 8.81721 8.98342 9.51274 10.83641 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067684 B = 0.012102 C = 0.011608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.588625 B = 2313.028022 C = 2411.485818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.143 3.857 3 N -0.488 5.488 4 C 0.220 3.780 5 C 0.099 3.901 6 H 0.050 0.950 7 C -0.140 4.140 8 C -0.603 4.603 9 H 0.058 0.942 10 C 0.042 3.958 11 N -0.891 5.891 12 Si 1.036 2.964 13 H -0.282 1.282 14 H -0.280 1.280 15 H -0.274 1.274 16 N -0.385 5.385 17 O 0.060 5.940 18 H 0.094 0.906 19 H 0.090 0.910 20 H 0.098 0.902 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.025 0.975 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 -0.635 5.778 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 N -0.223 5.223 4 C -0.053 4.053 5 C 0.079 3.921 6 H 0.068 0.932 7 C -0.199 4.199 8 C -0.641 4.641 9 H 0.076 0.924 10 C -0.165 4.165 11 N -0.523 5.523 12 Si 0.863 3.137 13 H -0.208 1.208 14 H -0.206 1.206 15 H -0.200 1.200 16 N -0.094 5.094 17 O 0.004 5.996 18 H 0.112 0.888 19 H 0.109 0.891 20 H 0.116 0.884 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.071 0.546 5.750 11.610 hybrid contribution -1.221 -1.454 -0.141 1.904 sum -11.292 -0.908 5.608 12.641 Atomic orbital electron populations 1.20208 0.81197 1.05004 1.04712 1.28707 0.98671 0.81975 0.98482 1.71907 1.01169 1.29007 1.20252 1.26410 0.94909 0.87981 0.95959 1.17671 0.84260 0.93321 0.96891 0.93238 1.22152 1.00270 1.01469 0.95975 1.21730 1.10429 1.22988 1.08929 0.92365 1.25741 0.91231 1.03972 0.95566 1.70841 1.31431 1.16464 1.33607 0.84157 0.76647 0.76142 0.76765 1.20778 1.20587 1.20048 1.74605 0.95649 1.16650 1.22545 1.85266 1.12062 1.35834 1.66431 0.88789 0.89149 0.88367 0.93172 0.91800 0.95546 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.00 0.38 -0.13 14 2 C 0.14 2.44 8.51 -13.06 -0.11 2.32 14 3 N -0.49 -10.42 11.55 -9.87 -0.11 -10.53 14 4 C 0.22 5.33 6.66 -156.37 -1.04 4.29 14 5 C 0.10 2.55 2.37 -92.93 -0.22 2.33 14 6 H 0.05 1.25 6.72 -51.93 -0.35 0.90 14 7 C -0.14 -3.27 8.90 37.16 0.33 -2.94 14 8 C -0.60 -17.67 8.75 -34.44 -0.30 -17.97 14 9 H 0.06 1.88 7.99 -52.49 -0.42 1.46 14 10 C 0.04 1.22 5.20 -17.82 -0.09 1.12 14 11 N -0.89 -27.51 13.70 55.43 0.76 -26.75 14 12 Si 1.04 25.03 26.44 -169.99 -4.50 20.53 14 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 15 H -0.27 -6.09 6.15 56.52 0.35 -5.75 14 16 N -0.39 -9.09 12.16 30.90 0.38 -8.71 14 17 O 0.06 1.16 11.31 18.12 0.20 1.37 14 18 H 0.09 0.76 8.14 -51.93 -0.42 0.34 14 19 H 0.09 0.63 8.14 -51.93 -0.42 0.20 14 20 H 0.10 0.83 8.14 -51.93 -0.42 0.41 14 21 H 0.05 1.18 8.14 -51.93 -0.42 0.76 14 22 H 0.06 1.49 5.47 -51.93 -0.28 1.21 14 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 14 24 H 0.27 8.39 8.73 -40.82 -0.36 8.04 14 LS Contribution 216.03 15.07 3.26 3.26 Total: -1.00 -33.19 216.03 -3.44 -36.63 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -2.37 Total: -4.80 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.06 Total: -10.98 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 1.02 Total: -46.00 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.50 Total: 20.53 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -33.19 -3.44 -36.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935506.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.094 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds