Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31136 * 126.54762 * 2 1 4 4 C 1.34497 * 105.60746 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.28373 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47271 * 0.02562 * 5 4 3 7 7 C 1.53001 * 109.46980 * 120.00176 * 5 4 3 8 8 C 1.50692 * 109.47388 * 240.00380 * 5 4 3 9 9 H 1.07999 * 120.00485 * 354.35816 * 8 5 4 10 10 C 1.37878 * 120.00191 * 174.36219 * 8 5 4 11 11 N 1.31517 * 120.00265 * 156.87331 * 10 8 5 12 12 Si 1.86801 * 119.99803 * 336.87646 * 10 8 5 13 13 H 1.48501 * 109.47172 * 180.02562 * 12 10 8 14 14 H 1.48506 * 109.46973 * 299.99670 * 12 10 8 15 15 H 1.48498 * 109.47415 * 59.99501 * 12 10 8 16 16 N 1.29950 * 107.42891 * 0.24461 * 4 3 2 17 17 O 1.21299 * 110.24575 * 359.57745 * 16 4 3 18 18 H 1.08999 * 109.47603 * 89.99616 * 1 2 3 19 19 H 1.09001 * 109.47375 * 210.00397 * 1 2 3 20 20 H 1.09006 * 109.47371 * 330.00183 * 1 2 3 21 21 H 1.09001 * 109.47164 * 53.17783 * 7 5 4 22 22 H 1.08994 * 109.47265 * 173.17755 * 7 5 4 23 23 H 1.09002 * 109.47128 * 293.18506 * 7 5 4 24 24 H 0.96996 * 119.99931 * 354.93241 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5728 -0.0006 5 6 4.8111 1.3886 -0.0014 6 1 4.5603 2.4495 -0.0009 7 6 5.6310 1.0584 1.2475 8 6 5.6174 1.0632 -1.2321 9 1 5.2955 0.2742 -1.8956 10 6 6.7661 1.7728 -1.5113 11 7 7.6970 1.2433 -2.2747 12 14 7.0003 3.4863 -0.8052 13 1 8.3077 4.0312 -1.2515 14 1 5.9072 4.3715 -1.2814 15 1 6.9719 3.4187 0.6779 16 7 3.4644 -0.7242 -0.0062 17 8 2.3028 -1.0735 -0.0006 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5138 21 1 5.7786 -0.0197 1.3107 22 1 6.5995 1.5548 1.1880 23 1 5.0989 1.4048 2.1335 24 1 7.6098 0.3271 -2.5811 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935506.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = 28.487856 kcal Electronic energy + Delta-G solvation = -10805.803389 eV Core-core repulsion = 8721.279412 eV Total energy + Delta-G solvation = -2084.523978 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.51564 -37.64316 -35.96197 -34.35772 -32.65146 -29.55936 -27.01588 -25.53936 -23.97318 -21.38426 -19.64876 -19.06610 -18.41920 -16.24483 -15.78261 -15.35920 -14.71606 -14.31172 -14.12556 -13.97172 -13.51878 -12.98403 -12.89779 -12.46720 -12.30251 -12.11848 -11.86403 -11.68985 -11.23939 -10.70353 -10.50289 -8.88404 -6.48137 0.34428 1.36246 1.46697 1.53628 1.74168 2.12287 2.45602 2.84121 2.93694 3.36990 4.13242 4.45934 4.53555 4.60996 4.66965 4.72459 4.83099 5.04415 5.10529 5.24876 5.45010 5.77105 5.91417 6.39823 7.25833 7.40785 8.48584 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067684 B = 0.012102 C = 0.011608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.588625 B = 2313.028022 C = 2411.485818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.168 3.832 3 N -0.517 5.517 4 C 0.192 3.808 5 C 0.095 3.905 6 H 0.058 0.942 7 C -0.132 4.132 8 C -0.610 4.610 9 H 0.008 0.992 10 C -0.005 4.005 11 N -0.920 5.920 12 Si 1.079 2.921 13 H -0.281 1.281 14 H -0.263 1.263 15 H -0.239 1.239 16 N -0.417 5.417 17 O 0.066 5.934 18 H 0.118 0.882 19 H 0.126 0.874 20 H 0.117 0.883 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.917 0.453 7.283 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 N -0.251 5.251 4 C -0.081 4.081 5 C 0.075 3.925 6 H 0.075 0.925 7 C -0.191 4.191 8 C -0.648 4.648 9 H 0.027 0.973 10 C -0.205 4.205 11 N -0.553 5.553 12 Si 0.898 3.102 13 H -0.207 1.207 14 H -0.188 1.188 15 H -0.162 1.162 16 N -0.127 5.127 17 O 0.009 5.991 18 H 0.136 0.864 19 H 0.144 0.856 20 H 0.135 0.865 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.128 1.624 7.263 14.230 hybrid contribution -0.774 -1.924 -0.669 2.179 sum -12.902 -0.300 6.595 14.493 Atomic orbital electron populations 1.20743 0.75605 1.07691 1.06964 1.30124 1.00831 0.80043 0.94193 1.71867 1.00394 1.30469 1.22378 1.26231 0.95696 0.88334 0.97796 1.17570 0.85078 0.94043 0.95846 0.92453 1.22019 1.00187 1.00686 0.96194 1.21782 1.11399 1.21586 1.10012 0.97330 1.27318 0.90627 1.07552 0.95041 1.70976 1.32881 1.15714 1.35717 0.83647 0.77105 0.71088 0.78379 1.20670 1.18775 1.16234 1.74571 0.97805 1.16786 1.23501 1.85207 1.11248 1.36350 1.66281 0.86383 0.85603 0.86457 0.94530 0.91898 0.92323 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 10.51 71.24 0.75 -0.02 14 2 C 0.17 5.31 8.51 88.38 0.75 6.06 14 3 N -0.52 -21.29 11.55 -303.22 -3.50 -24.79 14 4 C 0.19 9.27 6.66 138.46 0.92 10.19 14 5 C 0.10 4.87 2.37 -12.29 -0.03 4.84 14 6 H 0.06 2.82 6.72 -2.38 -0.02 2.80 14 7 C -0.13 -6.02 8.90 71.98 0.64 -5.38 14 8 C -0.61 -36.78 8.75 25.60 0.22 -36.55 14 9 H 0.01 0.57 7.99 -2.91 -0.02 0.55 14 10 C -0.01 -0.32 5.20 84.65 0.44 0.12 14 11 N -0.92 -58.48 13.70 21.45 0.29 -58.18 14 12 Si 1.08 49.41 26.44 68.60 1.81 51.22 14 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 14 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 14 15 H -0.24 -9.53 6.15 99.48 0.61 -8.92 14 16 N -0.42 -19.77 12.16 -60.34 -0.73 -20.51 14 17 O 0.07 2.50 11.31 74.90 0.85 3.35 14 18 H 0.12 1.33 8.14 -2.39 -0.02 1.31 14 19 H 0.13 1.05 8.14 -2.39 -0.02 1.03 14 20 H 0.12 1.40 8.14 -2.38 -0.02 1.38 14 21 H 0.04 1.71 8.14 -2.39 -0.02 1.69 14 22 H 0.06 2.82 5.47 -2.39 -0.01 2.81 14 23 H 0.06 2.26 8.14 -2.39 -0.02 2.24 14 24 H 0.25 16.53 8.73 -92.71 -0.81 15.72 14 Total: -1.00 -75.18 216.03 3.48 -71.70 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: 1.07 Total: -2.04 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.70 Total: -20.75 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -3.94 Total: -103.48 kcal Atomic # 8 Polarization: 2.50 SS G_CDS: 0.85 Total: 3.35 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.81 Total: 51.22 kcal Total: -75.18 3.48 -71.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935506.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.183 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds