Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62309 * 2 1 4 4 C 1.34473 * 108.70724 * 180.14641 * 3 2 1 5 5 C 1.50697 * 126.16850 * 179.82678 * 4 3 2 6 6 H 1.08996 * 109.47188 * 64.69497 * 5 4 3 7 7 N 1.46905 * 109.47125 * 184.69276 * 5 4 3 8 8 C 1.50703 * 109.47094 * 304.69203 * 5 4 3 9 9 H 1.08000 * 119.99934 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99701 * 179.97438 * 8 5 4 11 11 N 1.31513 * 120.00608 * 0.02562 * 10 8 5 12 12 Si 1.86806 * 119.99602 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47202 * 60.00054 * 12 10 8 14 14 H 1.48506 * 109.46657 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46909 * 299.99574 * 12 10 8 16 16 C 1.34335 * 107.66436 * 359.56897 * 4 3 2 17 17 O 1.33976 * 125.62051 * 179.66530 * 2 1 3 18 18 H 1.09011 * 109.46895 * 180.31251 * 1 2 3 19 19 H 1.09001 * 109.46898 * 300.30927 * 1 2 3 20 20 H 1.09003 * 109.47109 * 60.31588 * 1 2 3 21 21 H 1.00901 * 110.99869 * 296.04907 * 7 5 4 22 22 H 1.00896 * 110.99543 * 60.00030 * 7 5 4 23 23 H 0.96991 * 120.00497 * 180.02562 * 11 10 8 24 24 H 1.08001 * 126.44009 * 180.24460 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 -0.0033 5 6 4.7571 1.5727 -0.0081 6 1 4.7865 2.1434 0.9200 7 7 5.9773 0.7630 -0.1239 8 6 4.6695 2.5193 -1.1774 9 1 3.8255 2.4706 -1.8496 10 6 5.6663 3.4482 -1.3885 11 7 6.6937 3.5078 -0.5697 12 14 5.5574 4.6221 -2.8375 13 1 4.3236 5.4402 -2.7202 14 1 6.7448 5.5140 -2.8423 15 1 5.5176 3.8448 -4.1023 16 6 3.5698 -0.6757 0.0043 17 8 2.2873 -1.0891 0.0064 18 1 -0.3633 -1.0278 0.0056 19 1 -0.3633 0.5186 0.8872 20 1 -0.3633 0.5089 -0.8928 21 1 6.0925 0.1654 0.6809 22 1 5.9741 0.2241 -0.9769 23 1 7.3948 4.1615 -0.7180 24 1 4.4470 -1.3058 0.0079 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956503.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -5.579066 kcal Electronic energy + Delta-G solvation = -10731.543421 eV Core-core repulsion = 8645.542191 eV Total energy + Delta-G solvation = -2086.001230 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.14036 -37.17350 -35.15565 -33.76982 -32.14252 -28.31624 -28.09685 -24.82965 -22.40606 -21.32084 -18.63474 -18.08924 -17.50800 -16.59743 -16.24807 -15.43242 -15.04478 -14.46509 -14.10581 -13.85224 -13.53138 -13.18816 -12.78038 -12.65890 -12.04521 -11.89663 -11.35048 -11.17143 -10.57269 -9.56232 -9.13803 -8.00444 -6.20211 0.60873 1.41966 1.44000 1.51597 1.86883 1.94768 2.47688 3.19775 3.31920 4.05403 4.20046 4.38600 4.63020 4.67044 4.75374 5.03129 5.11082 5.31824 5.54149 5.74144 6.14270 6.53467 6.95530 7.06017 7.19417 7.50414 9.03659 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.055949 B = 0.012394 C = 0.010692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.337595 B = 2258.600628 C = 2618.263743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.172 3.828 3 N -0.516 5.516 4 C -0.030 4.030 5 C 0.297 3.703 6 H 0.013 0.987 7 N -0.811 5.811 8 C -0.536 4.536 9 H 0.037 0.963 10 C 0.034 3.966 11 N -0.880 5.880 12 Si 0.952 3.048 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.273 1.273 16 C -0.107 4.107 17 O -0.212 6.212 18 H 0.113 0.887 19 H 0.107 0.893 20 H 0.103 0.897 21 H 0.318 0.682 22 H 0.328 0.672 23 H 0.258 0.742 24 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -8.553 0.408 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.035 4.035 3 N -0.247 5.247 4 C -0.152 4.152 5 C 0.186 3.814 6 H 0.031 0.969 7 N -0.339 5.339 8 C -0.575 4.575 9 H 0.056 0.944 10 C -0.169 4.169 11 N -0.516 5.516 12 Si 0.778 3.222 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.198 1.198 16 C -0.176 4.176 17 O -0.100 6.100 18 H 0.132 0.868 19 H 0.126 0.874 20 H 0.121 0.879 21 H 0.130 0.870 22 H 0.141 0.859 23 H 0.067 0.933 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.490 -7.190 0.468 11.136 hybrid contribution -0.041 -0.673 -0.595 0.899 sum -8.531 -7.864 -0.126 11.603 Atomic orbital electron populations 1.20470 0.77782 1.06379 1.05864 1.27574 0.98387 0.78332 0.99236 1.70321 1.03008 1.31844 1.19508 1.23745 0.94774 0.94558 1.02088 1.17150 0.79457 0.88631 0.96151 0.96882 1.58957 1.40119 1.29662 1.05145 1.20908 1.06467 1.17772 1.12384 0.94437 1.25663 0.94753 0.98011 0.98499 1.70193 1.09627 1.34416 1.37352 0.85745 0.77357 0.78968 0.80167 1.20271 1.20427 1.19838 1.24894 0.85413 0.95645 1.11602 1.84352 1.16909 1.37762 1.70942 0.86828 0.87439 0.87859 0.86957 0.85906 0.93337 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.51 71.24 0.75 -0.25 14 2 C 0.17 6.03 8.34 88.34 0.74 6.77 14 3 N -0.52 -23.46 11.28 -291.97 -3.29 -26.76 14 4 C -0.03 -1.40 6.25 41.26 0.26 -1.14 14 5 C 0.30 15.80 3.16 43.42 0.14 15.93 14 6 H 0.01 0.81 8.14 -2.39 -0.02 0.79 14 7 N -0.81 -37.80 7.99 -174.95 -1.40 -39.20 14 8 C -0.54 -31.52 8.70 25.60 0.22 -31.30 14 9 H 0.04 2.27 7.74 -2.91 -0.02 2.25 14 10 C 0.03 1.98 5.39 84.65 0.46 2.44 14 11 N -0.88 -52.73 12.77 21.45 0.27 -52.45 14 12 Si 0.95 45.58 29.54 68.60 2.03 47.60 14 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 14 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 14 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 14 16 C -0.11 -3.96 11.19 66.93 0.75 -3.21 14 17 O -0.21 -7.39 10.78 -3.76 -0.04 -7.43 14 18 H 0.11 1.61 8.14 -2.38 -0.02 1.59 14 19 H 0.11 1.93 8.14 -2.39 -0.02 1.91 14 20 H 0.10 1.96 8.14 -2.39 -0.02 1.94 14 21 H 0.32 12.58 8.67 -89.69 -0.78 11.80 14 22 H 0.33 14.30 8.74 -89.70 -0.78 13.52 14 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 14 24 H 0.24 6.79 7.61 -2.91 -0.02 6.77 14 Total: -1.00 -71.67 220.84 0.54 -71.13 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.33 Total: 17.86 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 3.31 Total: -10.76 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -4.42 Total: -118.41 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.04 Total: -7.43 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.67 0.54 -71.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956503.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.550 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds