Wall clock time and date at job start Mon Mar 30 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30259 * 125.61640 * 2 1 4 4 C 1.34475 * 108.70083 * 180.19118 * 3 2 1 5 5 C 1.50698 * 126.16503 * 179.82504 * 4 3 2 6 6 H 1.09009 * 109.47290 * 184.68942 * 5 4 3 7 7 N 1.46902 * 109.47231 * 64.69154 * 5 4 3 8 8 C 1.50702 * 109.47465 * 304.68570 * 5 4 3 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 5 13 13 H 1.48502 * 109.46964 * 270.27509 * 12 10 8 14 14 H 1.48505 * 109.47036 * 30.26897 * 12 10 8 15 15 H 1.48490 * 109.47395 * 150.27411 * 12 10 8 16 16 C 1.34330 * 107.66740 * 359.56191 * 4 3 2 17 17 O 1.33963 * 125.62439 * 179.70701 * 2 1 3 18 18 H 1.09003 * 109.46684 * 180.31511 * 1 2 3 19 19 H 1.08998 * 109.47251 * 300.31669 * 1 2 3 20 20 H 1.09003 * 109.47062 * 60.31929 * 1 2 3 21 21 H 1.00902 * 110.99590 * 299.99265 * 7 5 4 22 22 H 1.00896 * 111.00313 * 63.95111 * 7 5 4 23 23 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 24 24 H 1.08007 * 126.44251 * 180.24751 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6677 -0.0043 5 6 4.7569 1.5729 -0.0095 6 1 5.6624 0.9722 -0.0962 7 7 4.7973 2.3416 1.2417 8 6 4.6687 2.5200 -1.1784 9 1 3.8244 2.4714 -1.8501 10 6 5.6658 3.4482 -1.3903 11 7 6.6938 3.5077 -0.5721 12 14 5.5602 4.6171 -2.8436 13 1 6.2177 4.0004 -4.0237 14 1 4.1344 4.8892 -3.1574 15 1 6.2444 5.8908 -2.5052 16 6 3.5698 -0.6755 0.0029 17 8 2.2873 -1.0889 0.0056 18 1 -0.3633 -1.0277 0.0057 19 1 -0.3633 0.5187 0.8871 20 1 -0.3633 0.5089 -0.8929 21 1 3.9682 2.9072 1.3454 22 1 4.9213 1.7326 2.0365 23 1 6.7484 2.9009 0.1828 24 1 4.4470 -1.3056 0.0057 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956514.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:16 Heat of formation + Delta-G solvation = -13.375577 kcal Electronic energy + Delta-G solvation = -10764.637710 eV Core-core repulsion = 8678.298397 eV Total energy + Delta-G solvation = -2086.339312 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.20313 -37.40883 -35.22539 -33.50812 -32.26640 -28.83569 -27.51616 -24.55961 -22.35897 -21.89461 -19.01440 -17.89746 -17.61432 -16.56399 -16.01505 -15.53499 -14.96756 -14.81224 -14.17825 -13.88687 -13.51292 -13.23792 -12.63178 -12.50829 -12.05290 -11.91014 -11.46501 -10.77080 -10.47697 -9.74875 -9.37328 -8.41783 -6.24570 0.54758 1.53783 1.62996 1.78125 1.82018 1.89254 2.62752 3.19464 3.31954 4.05626 4.12137 4.18606 4.57868 4.62431 4.64797 4.90062 5.04805 5.18299 5.45776 5.90029 6.16921 6.57825 6.74078 6.85583 7.03162 7.63480 8.96647 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.056742 B = 0.012185 C = 0.011046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.342845 B = 2297.439360 C = 2534.247920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.171 3.829 3 N -0.508 5.508 4 C -0.033 4.033 5 C 0.277 3.723 6 H 0.028 0.972 7 N -0.826 5.826 8 C -0.610 4.610 9 H 0.027 0.973 10 C -0.011 4.011 11 N -0.918 5.918 12 Si 1.114 2.886 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.282 1.282 16 C -0.098 4.098 17 O -0.211 6.211 18 H 0.113 0.887 19 H 0.108 0.892 20 H 0.102 0.898 21 H 0.330 0.670 22 H 0.316 0.684 23 H 0.279 0.721 24 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 -8.097 1.224 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.037 4.037 3 N -0.239 5.239 4 C -0.154 4.154 5 C 0.167 3.833 6 H 0.046 0.954 7 N -0.353 5.353 8 C -0.648 4.648 9 H 0.045 0.955 10 C -0.214 4.214 11 N -0.553 5.553 12 Si 0.938 3.062 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.207 1.207 16 C -0.168 4.168 17 O -0.099 6.099 18 H 0.131 0.869 19 H 0.126 0.874 20 H 0.121 0.879 21 H 0.142 0.858 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.920 -5.951 0.186 10.724 hybrid contribution -1.046 -2.445 1.116 2.884 sum -9.966 -8.396 1.302 13.096 Atomic orbital electron populations 1.20462 0.77755 1.06383 1.05844 1.27555 0.98374 0.78352 0.99394 1.70295 1.02628 1.31656 1.19293 1.23337 0.94632 0.94269 1.03142 1.17515 0.86596 0.89514 0.89691 0.95437 1.59319 1.45462 1.26967 1.03572 1.21886 1.09388 1.21870 1.11705 0.95451 1.26974 0.92116 0.99044 1.03312 1.70654 1.30309 1.38644 1.15705 0.82970 0.75784 0.74695 0.72781 1.19915 1.20960 1.20740 1.25199 0.85441 0.95980 1.10225 1.84363 1.16931 1.37829 1.70776 0.86852 0.87388 0.87934 0.85849 0.87272 0.90999 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.51 71.24 0.75 -0.22 14 2 C 0.17 5.87 8.34 88.34 0.74 6.61 14 3 N -0.51 -22.41 11.28 -291.98 -3.29 -25.70 14 4 C -0.03 -1.50 5.84 41.26 0.24 -1.26 14 5 C 0.28 14.48 2.71 43.42 0.12 14.60 14 6 H 0.03 1.51 7.98 -2.38 -0.02 1.49 14 7 N -0.83 -40.63 7.78 -174.94 -1.36 -41.99 14 8 C -0.61 -36.14 8.70 25.60 0.22 -35.92 14 9 H 0.03 1.69 7.74 -2.91 -0.02 1.67 14 10 C -0.01 -0.66 5.39 84.65 0.46 -0.20 14 11 N -0.92 -56.93 13.51 21.45 0.29 -56.64 14 12 Si 1.11 52.80 29.90 68.60 2.05 54.85 14 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 14 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 14 15 H -0.28 -13.11 7.11 99.48 0.71 -12.41 14 16 C -0.10 -3.69 12.06 66.93 0.81 -2.88 14 17 O -0.21 -7.33 10.77 -3.65 -0.04 -7.37 14 18 H 0.11 1.58 8.14 -2.39 -0.02 1.57 14 19 H 0.11 1.88 8.14 -2.39 -0.02 1.86 14 20 H 0.10 1.93 8.14 -2.39 -0.02 1.91 14 21 H 0.33 16.53 8.98 -89.69 -0.81 15.72 14 22 H 0.32 13.49 9.06 -89.70 -0.81 12.68 14 23 H 0.28 17.33 6.39 -92.70 -0.59 16.74 14 24 H 0.24 7.00 8.06 -2.91 -0.02 6.97 14 Total: -1.00 -72.36 220.76 0.77 -71.60 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.21 Total: 24.52 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 3.33 Total: -19.26 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -4.36 Total: -124.33 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.04 Total: -7.37 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Total: -72.36 0.77 -71.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956514.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.220 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds