Wall clock time and date at job start Mon Mar 30 2020 01:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29940 * 126.29078 * 2 1 4 4 O 1.21304 * 110.25582 * 179.68050 * 3 2 1 5 5 C 1.33647 * 109.80784 * 0.46474 * 4 3 2 6 6 C 1.50698 * 126.55199 * 179.79864 * 5 4 3 7 7 H 1.08998 * 109.47083 * 179.68695 * 6 5 4 8 8 C 1.53006 * 109.46561 * 59.69078 * 6 5 4 9 9 C 1.50697 * 109.46993 * 299.69279 * 6 5 4 10 10 H 1.07991 * 120.00449 * 359.72131 * 9 6 5 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 6 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 N 1.31126 * 106.89472 * 359.54097 * 5 4 3 18 18 H 1.08997 * 109.47452 * 270.02673 * 1 2 3 19 19 H 1.09002 * 109.46877 * 30.03263 * 1 2 3 20 20 H 1.08998 * 109.47255 * 150.02833 * 1 2 3 21 21 H 1.08994 * 109.47204 * 59.99959 * 8 6 5 22 22 H 1.09006 * 109.46531 * 179.97438 * 8 6 5 23 23 H 1.08998 * 109.47109 * 299.99601 * 8 6 5 24 24 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5299 -0.6213 0.0009 6 6 4.7969 -1.4371 0.0016 7 1 4.5460 -2.4978 0.0018 8 6 5.6157 -1.1064 1.2510 9 6 5.6042 -1.1121 -1.2287 10 1 5.2345 -0.3906 -1.9422 11 6 6.8125 -1.7397 -1.4461 12 7 7.2630 -2.6180 -0.5769 13 14 7.8096 -1.3425 -2.9749 14 1 8.7303 -0.2139 -2.6860 15 1 8.5988 -2.5352 -3.3748 16 1 6.8924 -0.9629 -4.0793 17 7 2.3030 -1.0841 0.0007 18 1 -0.3634 0.0005 1.0276 19 1 -0.3633 0.8897 -0.5144 20 1 -0.3634 -0.8902 -0.5134 21 1 5.0318 -1.3414 2.1408 22 1 6.5320 -1.6968 1.2517 23 1 5.8666 -0.0456 1.2508 24 1 8.1132 -3.0593 -0.7297 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963273.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:47 Heat of formation + Delta-G solvation = 32.551595 kcal Electronic energy + Delta-G solvation = -10787.921815 eV Core-core repulsion = 8703.574055 eV Total energy + Delta-G solvation = -2084.347761 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.38073 -37.09812 -36.63742 -34.00251 -31.83211 -29.83973 -27.37985 -25.21699 -24.06337 -21.64154 -19.10801 -18.44146 -17.90645 -16.88518 -15.68938 -15.12418 -14.68442 -14.39394 -13.80034 -13.71077 -13.18220 -13.03088 -12.85183 -12.52192 -12.32653 -12.16235 -12.09412 -11.85227 -11.32655 -10.65138 -10.55711 -8.22345 -6.39173 0.28092 1.34875 1.45407 1.47154 1.56799 2.08273 2.40162 2.91018 3.08703 3.25774 4.21650 4.59379 4.61340 4.67932 4.76010 4.90592 4.94371 5.08939 5.16244 5.40704 5.64303 5.82919 6.03972 6.62470 7.28380 7.30140 8.83396 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067054 B = 0.011540 C = 0.010818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.474857 B = 2425.788029 C = 2587.659042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.160 3.840 3 N -0.425 5.425 4 O 0.049 5.951 5 C 0.234 3.766 6 C 0.125 3.875 7 H 0.055 0.945 8 C -0.128 4.128 9 C -0.545 4.545 10 H 0.051 0.949 11 C 0.031 3.969 12 N -0.904 5.904 13 Si 0.965 3.035 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.275 1.275 17 N -0.532 5.532 18 H 0.107 0.893 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.035 0.965 22 H 0.086 0.914 23 H 0.041 0.959 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 3.037 0.944 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 N -0.143 5.143 4 O 0.000 6.000 5 C 0.015 3.985 6 C 0.104 3.896 7 H 0.073 0.927 8 C -0.186 4.186 9 C -0.583 4.583 10 H 0.069 0.931 11 C -0.171 4.171 12 N -0.541 5.541 13 Si 0.789 3.211 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.200 1.200 17 N -0.267 5.267 18 H 0.125 0.875 19 H 0.119 0.881 20 H 0.119 0.881 21 H 0.054 0.946 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.264 3.413 0.985 8.086 hybrid contribution 0.803 0.002 -0.702 1.067 sum -6.460 3.414 0.283 7.313 Atomic orbital electron populations 1.20330 0.79614 1.05661 1.05638 1.26856 1.02390 0.83332 0.98768 1.74506 0.89695 1.25141 1.24923 1.85220 1.22388 1.25661 1.66736 1.29884 0.97566 0.81462 0.89555 1.17653 0.82364 0.92313 0.97242 0.92734 1.21707 1.01710 1.01043 0.94161 1.21042 1.05303 1.25867 1.06123 0.93065 1.25593 0.97776 0.94073 0.99635 1.69936 1.21154 1.26696 1.36348 0.85449 0.78440 0.78134 0.79041 1.19513 1.20069 1.19964 1.71980 1.00242 1.30224 1.24296 0.87498 0.88102 0.88108 0.94585 0.89582 0.93986 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.30 10.51 71.23 0.75 -0.55 14 2 C 0.16 6.04 8.22 138.46 1.14 7.18 14 3 N -0.43 -17.77 12.16 -60.30 -0.73 -18.50 14 4 O 0.05 2.25 11.31 74.79 0.85 3.09 14 5 C 0.23 11.01 6.96 88.38 0.61 11.62 14 6 C 0.12 6.25 2.77 -12.29 -0.03 6.22 14 7 H 0.05 2.92 8.14 -2.39 -0.02 2.90 14 8 C -0.13 -5.89 8.95 71.98 0.64 -5.25 14 9 C -0.54 -29.27 8.55 25.60 0.22 -29.05 14 10 H 0.05 2.80 7.74 -2.92 -0.02 2.77 14 11 C 0.03 1.60 5.31 84.66 0.45 2.05 14 12 N -0.90 -48.31 11.31 21.45 0.24 -48.06 14 13 Si 0.96 41.64 29.54 68.60 2.03 43.67 14 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 14 15 H -0.28 -11.48 7.11 99.48 0.71 -10.77 14 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 14 17 N -0.53 -23.49 11.55 -303.19 -3.50 -26.99 14 18 H 0.11 2.07 8.14 -2.39 -0.02 2.05 14 19 H 0.10 2.01 8.14 -2.39 -0.02 1.99 14 20 H 0.10 2.14 8.14 -2.39 -0.02 2.12 14 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 14 22 H 0.09 4.25 6.06 -2.38 -0.01 4.24 14 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 14 24 H 0.27 13.63 8.31 -92.71 -0.77 12.86 14 Total: -1.00 -58.72 219.40 3.86 -54.87 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.20 Total: -0.30 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 3.78 Total: -7.78 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.99 Total: -93.55 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.85 Total: 3.09 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -58.72 3.86 -54.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963273.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.420 kcal (2) G-P(sol) polarization free energy of solvation -58.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds