Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29943 * 126.29155 * 2 1 4 4 O 1.21296 * 110.25398 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.81031 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55048 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46842 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46855 * 300.02141 * 6 5 4 9 9 C 1.50700 * 109.47324 * 60.01795 * 6 5 4 10 10 H 1.08001 * 119.99589 * 356.76724 * 9 6 5 11 11 C 1.37871 * 119.99919 * 176.76020 * 9 6 5 12 12 N 1.31515 * 120.00006 * 352.57008 * 11 9 6 13 13 Si 1.86801 * 119.99969 * 172.56868 * 11 9 6 14 14 H 1.48503 * 109.46982 * 265.08487 * 13 11 9 15 15 H 1.48501 * 109.47169 * 145.08470 * 13 11 9 16 16 H 1.48499 * 109.46927 * 25.08246 * 13 11 9 17 17 N 1.31127 * 106.89909 * 0.22228 * 5 4 3 18 18 H 1.09000 * 109.47364 * 89.97018 * 1 2 3 19 19 H 1.08998 * 109.47548 * 209.97652 * 1 2 3 20 20 H 1.09002 * 109.46740 * 329.97765 * 1 2 3 21 21 H 1.09000 * 109.46810 * 178.98984 * 8 6 5 22 22 H 1.08999 * 109.47030 * 298.99132 * 8 6 5 23 23 H 1.08998 * 109.47195 * 58.99268 * 8 6 5 24 24 H 0.97003 * 119.99847 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0003 6 6 4.7969 -1.4372 0.0003 7 1 4.5460 -2.4979 -0.0003 8 6 5.6164 -1.1063 -1.2487 9 6 5.6036 -1.1124 1.2310 10 1 5.2613 -0.3501 1.9153 11 6 6.7784 -1.7883 1.4834 12 7 7.1215 -2.8132 0.7340 13 14 7.8830 -1.2485 2.8898 14 1 8.9325 -0.3343 2.3720 15 1 8.5229 -2.4404 3.5023 16 1 7.0716 -0.5415 3.9131 17 7 2.3029 -1.0842 -0.0052 18 1 -0.3634 0.0005 -1.0276 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5142 21 1 6.5412 -1.6831 -1.2397 22 1 5.0398 -1.3579 -2.1388 23 1 5.8520 -0.0421 -1.2572 24 1 7.9482 -3.2885 0.9113 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963274.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = 50.132112 kcal Electronic energy + Delta-G solvation = -10781.314339 eV Core-core repulsion = 8697.728926 eV Total energy + Delta-G solvation = -2083.585412 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.70004 -35.34464 -34.81927 -32.17454 -30.12094 -28.46520 -25.36499 -23.43086 -22.39897 -19.90170 -17.35142 -16.65390 -16.01636 -15.01984 -13.85733 -13.56566 -13.25229 -12.86756 -12.52515 -11.91645 -11.60199 -11.23275 -11.00954 -10.70314 -10.60018 -10.42208 -10.29411 -10.02052 -9.46133 -8.86536 -8.56900 -6.24357 -4.30504 2.01955 3.01112 3.23882 3.31038 3.35583 3.87564 4.27502 4.41550 4.78240 5.11097 5.59305 5.65169 5.74698 6.16612 6.53162 6.56298 6.67663 6.82528 6.85246 7.37380 7.56963 7.74279 7.97271 8.68836 9.00745 9.34693 10.84183 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067289 B = 0.011489 C = 0.010858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.016038 B = 2436.475299 C = 2578.105157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.151 3.849 3 N -0.414 5.414 4 O 0.066 5.934 5 C 0.244 3.756 6 C 0.123 3.877 7 H 0.079 0.921 8 C -0.134 4.134 9 C -0.525 4.525 10 H 0.063 0.937 11 C 0.071 3.929 12 N -0.883 5.883 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.272 1.272 17 N -0.518 5.518 18 H 0.080 0.920 19 H 0.085 0.915 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.020 0.980 23 H 0.041 0.959 24 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 3.088 -1.561 6.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 N -0.128 5.128 4 O 0.013 5.987 5 C 0.026 3.974 6 C 0.103 3.897 7 H 0.097 0.903 8 C -0.193 4.193 9 C -0.564 4.564 10 H 0.081 0.919 11 C -0.133 4.133 12 N -0.520 5.520 13 Si 0.730 3.270 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.197 1.197 17 N -0.252 5.252 18 H 0.099 0.901 19 H 0.104 0.896 20 H 0.097 0.903 21 H 0.107 0.893 22 H 0.039 0.961 23 H 0.060 0.940 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.328 3.442 -1.593 7.378 hybrid contribution 0.738 0.175 0.762 1.075 sum -5.590 3.617 -0.830 6.710 Atomic orbital electron populations 1.19978 0.84018 1.03843 1.03421 1.25789 1.00141 0.84729 1.01493 1.74505 0.90099 1.24605 1.23600 1.85234 1.21329 1.26065 1.66100 1.30154 0.97518 0.81038 0.88729 1.17834 0.81646 0.93467 0.96762 0.90291 1.21796 1.01892 1.00981 0.94619 1.20872 1.06724 1.22026 1.06752 0.91903 1.24883 0.97526 0.94067 0.96775 1.69926 1.24030 1.18534 1.39477 0.86396 0.80547 0.78320 0.81777 1.20257 1.20968 1.19693 1.71963 1.00251 1.29037 1.23958 0.90094 0.89606 0.90257 0.89288 0.96072 0.94004 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 36.00 0.38 -0.36 14 2 C 0.15 3.01 8.22 -156.37 -1.28 1.72 14 3 N -0.41 -8.85 12.16 30.90 0.38 -8.48 14 4 O 0.07 1.52 11.31 18.10 0.20 1.73 14 5 C 0.24 5.71 6.96 -13.06 -0.09 5.62 14 6 C 0.12 3.04 2.66 -92.92 -0.25 2.79 14 7 H 0.08 2.08 8.14 -51.93 -0.42 1.65 14 8 C -0.13 -3.03 9.00 37.16 0.33 -2.70 14 9 C -0.53 -13.95 8.50 -34.44 -0.29 -14.24 14 10 H 0.06 1.69 7.75 -52.49 -0.41 1.29 14 11 C 0.07 1.87 5.22 -17.82 -0.09 1.77 14 12 N -0.88 -23.74 11.91 55.43 0.66 -23.08 14 13 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 14 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 17 N -0.52 -11.64 11.55 -9.87 -0.11 -11.76 14 18 H 0.08 0.95 8.14 -51.93 -0.42 0.52 14 19 H 0.09 1.06 8.14 -51.93 -0.42 0.64 14 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 14 21 H 0.09 2.13 6.61 -51.93 -0.34 1.79 14 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 14 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 14 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 14 LS Contribution 220.36 15.07 3.32 3.32 Total: -1.00 -28.12 220.36 -4.29 -32.41 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -2.42 Total: -4.20 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.30 Total: -5.39 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.92 Total: -43.31 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.12 -4.29 -32.41 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963274.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.546 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds