Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29943 * 126.29155 * 2 1 4 4 O 1.21296 * 110.25398 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.81031 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55048 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46842 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46855 * 300.02141 * 6 5 4 9 9 C 1.50700 * 109.47324 * 60.01795 * 6 5 4 10 10 H 1.08001 * 119.99589 * 356.76724 * 9 6 5 11 11 C 1.37871 * 119.99919 * 176.76020 * 9 6 5 12 12 N 1.31515 * 120.00006 * 352.57008 * 11 9 6 13 13 Si 1.86801 * 119.99969 * 172.56868 * 11 9 6 14 14 H 1.48503 * 109.46982 * 265.08487 * 13 11 9 15 15 H 1.48501 * 109.47169 * 145.08470 * 13 11 9 16 16 H 1.48499 * 109.46927 * 25.08246 * 13 11 9 17 17 N 1.31127 * 106.89909 * 0.22228 * 5 4 3 18 18 H 1.09000 * 109.47364 * 89.97018 * 1 2 3 19 19 H 1.08998 * 109.47548 * 209.97652 * 1 2 3 20 20 H 1.09002 * 109.46740 * 329.97765 * 1 2 3 21 21 H 1.09000 * 109.46810 * 178.98984 * 8 6 5 22 22 H 1.08999 * 109.47030 * 298.99132 * 8 6 5 23 23 H 1.08998 * 109.47195 * 58.99268 * 8 6 5 24 24 H 0.97003 * 119.99847 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0003 6 6 4.7969 -1.4372 0.0003 7 1 4.5460 -2.4979 -0.0003 8 6 5.6164 -1.1063 -1.2487 9 6 5.6036 -1.1124 1.2310 10 1 5.2613 -0.3501 1.9153 11 6 6.7784 -1.7883 1.4834 12 7 7.1215 -2.8132 0.7340 13 14 7.8830 -1.2485 2.8898 14 1 8.9325 -0.3343 2.3720 15 1 8.5229 -2.4404 3.5023 16 1 7.0716 -0.5415 3.9131 17 7 2.3029 -1.0842 -0.0052 18 1 -0.3634 0.0005 -1.0276 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5142 21 1 6.5412 -1.6831 -1.2397 22 1 5.0398 -1.3579 -2.1388 23 1 5.8520 -0.0421 -1.2572 24 1 7.9482 -3.2885 0.9113 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963274.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = 31.371245 kcal Electronic energy + Delta-G solvation = -10782.127871 eV Core-core repulsion = 8697.728926 eV Total energy + Delta-G solvation = -2084.398944 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.38087 -37.08886 -36.62314 -34.00508 -31.88061 -29.84158 -27.34915 -25.24295 -24.06979 -21.65169 -19.10015 -18.44207 -17.91431 -16.87291 -15.66265 -15.12107 -14.66876 -14.39321 -13.83654 -13.74327 -13.22329 -13.05876 -12.81818 -12.51691 -12.37924 -12.17267 -12.08509 -11.82424 -11.33612 -10.63271 -10.57574 -8.25111 -6.38495 0.28341 1.35127 1.44848 1.47403 1.56985 2.08259 2.40352 2.91459 3.08214 3.25652 4.21124 4.59275 4.61453 4.67454 4.74234 4.88329 4.93637 5.08821 5.16334 5.40495 5.63355 5.75596 5.99754 6.63329 7.28722 7.29924 8.83380 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067289 B = 0.011489 C = 0.010858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.016038 B = 2436.475299 C = 2578.105157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.159 3.841 3 N -0.425 5.425 4 O 0.049 5.951 5 C 0.234 3.766 6 C 0.124 3.876 7 H 0.056 0.944 8 C -0.123 4.123 9 C -0.546 4.546 10 H 0.052 0.948 11 C 0.032 3.968 12 N -0.905 5.905 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.274 1.274 17 N -0.532 5.532 18 H 0.107 0.893 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 3.571 -1.354 7.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 N -0.142 5.142 4 O 0.000 6.000 5 C 0.015 3.985 6 C 0.104 3.896 7 H 0.074 0.926 8 C -0.182 4.182 9 C -0.584 4.584 10 H 0.070 0.930 11 C -0.170 4.170 12 N -0.542 5.542 13 Si 0.787 3.213 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.199 1.199 17 N -0.267 5.267 18 H 0.125 0.875 19 H 0.119 0.881 20 H 0.119 0.881 21 H 0.091 0.909 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.019 3.932 -1.393 8.165 hybrid contribution 0.856 0.009 0.681 1.094 sum -6.163 3.941 -0.712 7.350 Atomic orbital electron populations 1.20329 0.79642 1.05646 1.05635 1.26853 1.02387 0.83328 0.98796 1.74503 0.89702 1.25109 1.24908 1.85215 1.22381 1.25633 1.66732 1.29869 0.97567 0.81445 0.89579 1.17648 0.82412 0.92459 0.97117 0.92601 1.21648 1.01053 1.00939 0.94550 1.21039 1.07650 1.22175 1.07532 0.92999 1.25586 0.98468 0.93923 0.99001 1.70003 1.24487 1.19051 1.40639 0.85469 0.78782 0.78114 0.78900 1.19354 1.20272 1.19907 1.71986 1.00280 1.30223 1.24259 0.87499 0.88137 0.88100 0.90852 0.94191 0.93488 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.30 10.51 71.23 0.75 -0.56 14 2 C 0.16 6.03 8.22 138.46 1.14 7.16 14 3 N -0.42 -17.67 12.16 -60.34 -0.73 -18.40 14 4 O 0.05 2.26 11.31 74.83 0.85 3.10 14 5 C 0.23 10.98 6.96 88.38 0.62 11.59 14 6 C 0.12 6.20 2.66 -12.28 -0.03 6.17 14 7 H 0.06 3.02 8.14 -2.39 -0.02 3.00 14 8 C -0.12 -5.58 9.00 71.98 0.65 -4.93 14 9 C -0.55 -29.27 8.50 25.60 0.22 -29.05 14 10 H 0.05 2.83 7.75 -2.91 -0.02 2.81 14 11 C 0.03 1.67 5.22 84.65 0.44 2.11 14 12 N -0.90 -48.72 11.91 21.44 0.26 -48.46 14 13 Si 0.96 41.64 29.54 68.60 2.03 43.67 14 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 14 15 H -0.28 -11.64 7.11 99.48 0.71 -10.94 14 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 14 17 N -0.53 -23.51 11.55 -303.21 -3.50 -27.02 14 18 H 0.11 2.07 8.14 -2.39 -0.02 2.05 14 19 H 0.10 2.14 8.14 -2.39 -0.02 2.12 14 20 H 0.10 2.01 8.14 -2.39 -0.02 1.99 14 21 H 0.07 3.54 6.61 -2.39 -0.02 3.52 14 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 14 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 14 24 H 0.27 13.72 8.31 -92.71 -0.77 12.95 14 Total: -1.00 -59.03 220.36 3.86 -55.17 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 1.20 Total: -0.55 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 3.78 Total: -7.50 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -3.98 Total: -93.88 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.85 Total: 3.10 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -59.03 3.86 -55.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963274.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.537 kcal (2) G-P(sol) polarization free energy of solvation -59.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds