Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.39817 * 125.86148 * 34.71556 * 12 2 1 14 14 C 1.35945 * 107.83723 * 179.86362 * 13 12 2 15 15 O 1.35762 * 126.19506 * 180.16304 * 14 13 12 16 16 N 1.35136 * 107.61121 * 0.39413 * 14 13 12 17 17 H 0.97003 * 126.03273 * 179.77160 * 16 14 13 18 18 N 1.30837 * 125.85687 * 215.02220 * 12 2 1 19 19 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 20 20 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 23 23 H 1.07999 * 126.08171 * 0.02562 * 13 12 2 24 24 H 0.96698 * 113.99872 * 270.29595 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 6 1.4271 -1.8105 1.8456 14 6 2.1855 -2.1567 2.9194 15 8 1.9396 -3.1786 3.7786 16 7 3.2258 -1.2962 2.9796 17 1 3.9309 -1.2991 3.6458 18 7 3.1064 -0.3999 1.9100 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 0.7173 1.1669 -3.4844 23 1 0.5199 -2.3000 1.5233 24 1 1.3902 -2.9326 4.5354 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993836.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = 24.786825 kcal Electronic energy + Delta-G solvation = -10686.894192 eV Core-core repulsion = 8602.209726 eV Total energy + Delta-G solvation = -2084.684466 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.64718 -37.00314 -34.33526 -31.46091 -28.91732 -28.55265 -25.09249 -22.19724 -21.12548 -18.91039 -18.29754 -16.43773 -15.94285 -14.74881 -14.41325 -13.61311 -13.28179 -12.82716 -12.37973 -11.49579 -11.29157 -10.91313 -10.78976 -10.36974 -10.19983 -9.89280 -9.55350 -9.19062 -8.35380 -8.29661 -8.00634 -5.97887 -4.03404 2.26303 3.17293 3.33600 3.40855 3.45762 3.60629 4.46750 4.55482 5.32529 5.54346 6.15347 6.35038 6.62861 6.89891 6.94891 7.11657 7.18447 7.50628 7.69793 7.85721 8.07433 8.11659 8.39093 8.52058 8.97806 9.60357 11.08467 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.061331 B = 0.011346 C = 0.010797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.427443 B = 2467.146501 C = 2592.742708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.137 3.863 13 C -0.263 4.263 14 C 0.234 3.766 15 O -0.474 6.474 16 N -0.503 5.503 17 H 0.426 0.574 18 N -0.293 5.293 19 H 0.011 0.989 20 H 0.089 0.911 21 H 0.032 0.968 22 H 0.261 0.739 23 H 0.148 0.852 24 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -3.989 9.266 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.087 3.913 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.029 4.029 13 C -0.293 4.293 14 C 0.065 3.935 15 O -0.276 6.276 16 N -0.220 5.220 17 H 0.268 0.732 18 N -0.118 5.118 19 H 0.030 0.970 20 H 0.107 0.893 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.166 0.834 24 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.902 -3.527 8.875 9.593 hybrid contribution -0.213 -0.945 -0.034 0.970 sum 0.689 -4.472 8.841 9.932 Atomic orbital electron populations 1.21764 0.97003 0.99617 1.00501 1.17432 0.92790 0.95358 0.85680 0.93750 1.20989 1.31197 1.12271 0.89540 0.92503 1.24909 0.95087 0.95008 0.98874 1.69888 1.36848 1.22820 1.23389 0.86463 0.78639 0.79667 0.82827 1.19802 1.20968 1.21015 1.23175 0.90256 0.93722 0.95723 1.21208 1.04730 1.03465 0.99932 1.18823 0.91702 0.88468 0.94509 1.84887 1.73430 1.30713 1.38582 1.46826 1.23183 1.25374 1.26622 0.73164 1.77524 1.21903 1.12421 0.99988 0.97037 0.89276 0.94892 0.92938 0.83411 0.75517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.56 37.16 0.32 -2.80 14 2 C 0.11 2.80 2.76 -92.92 -0.26 2.54 14 3 H 0.04 1.25 8.14 -51.93 -0.42 0.82 14 4 C -0.50 -14.08 8.54 -34.44 -0.29 -14.38 14 5 H 0.06 1.64 7.74 -52.49 -0.41 1.23 14 6 C 0.06 1.74 5.31 -17.82 -0.09 1.64 14 7 N -0.89 -25.28 11.33 55.43 0.63 -24.65 14 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 14 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 14 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 14 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 12 C 0.14 3.21 6.06 -82.42 -0.50 2.71 14 13 C -0.26 -5.37 10.00 -39.81 -0.40 -5.77 14 14 C 0.23 4.11 8.43 -16.92 -0.14 3.96 14 15 O -0.47 -6.46 13.65 -18.99 -0.26 -6.72 14 16 N -0.50 -8.88 7.36 30.36 0.22 -8.66 14 17 H 0.43 5.79 8.96 -182.62 -1.64 4.16 14 18 N -0.29 -6.53 12.69 33.66 0.43 -6.11 14 19 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 14 20 H 0.09 2.32 6.08 -51.93 -0.32 2.00 14 21 H 0.03 0.74 7.30 -51.93 -0.38 0.36 14 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 14 23 H 0.15 2.84 7.42 -52.49 -0.39 2.45 14 24 H 0.39 3.08 9.06 45.56 0.41 3.49 14 LS Contribution 216.71 15.07 3.27 3.27 Total: -1.00 -31.49 216.71 -4.80 -36.29 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -2.69 Total: 2.12 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.37 Total: -12.09 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 1.28 Total: -39.42 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.26 Total: -6.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.49 -4.80 -36.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993836.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.080 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds