Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.39817 * 125.86148 * 34.71556 * 12 2 1 14 14 C 1.35945 * 107.83723 * 179.86362 * 13 12 2 15 15 O 1.35762 * 126.19506 * 180.16304 * 14 13 12 16 16 N 1.35136 * 107.61121 * 0.39413 * 14 13 12 17 17 H 0.97003 * 126.03273 * 179.77160 * 16 14 13 18 18 N 1.30837 * 125.85687 * 215.02220 * 12 2 1 19 19 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 20 20 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 23 23 H 1.07999 * 126.08171 * 0.02562 * 13 12 2 24 24 H 0.96698 * 113.99872 * 270.29595 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 6 1.4271 -1.8105 1.8456 14 6 2.1855 -2.1567 2.9194 15 8 1.9396 -3.1786 3.7786 16 7 3.2258 -1.2962 2.9796 17 1 3.9309 -1.2991 3.6458 18 7 3.1064 -0.3999 1.9100 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 0.7173 1.1669 -3.4844 23 1 0.5199 -2.3000 1.5233 24 1 1.3902 -2.9326 4.5354 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993836.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = -0.625725 kcal Electronic energy + Delta-G solvation = -10687.996163 eV Core-core repulsion = 8602.209726 eV Total energy + Delta-G solvation = -2085.786437 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.17482 -38.26594 -36.27680 -33.37824 -30.68830 -30.07398 -27.18457 -24.08378 -22.54103 -20.48411 -19.86665 -18.32011 -17.51972 -16.63511 -16.00033 -15.15447 -14.88048 -14.67772 -14.07097 -13.44579 -12.84322 -12.75611 -12.69940 -12.24986 -12.10951 -11.81561 -11.28868 -11.11539 -10.44031 -10.03226 -9.52119 -8.08840 -6.22464 0.83478 1.43708 1.44909 1.56825 1.77057 1.92721 2.48340 3.18708 3.27585 3.95608 4.60487 4.76733 4.96369 5.00343 5.18045 5.24380 5.58108 5.70918 5.84198 6.08783 6.13548 6.32772 6.78193 6.82505 6.96196 7.44622 8.96640 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.061331 B = 0.011346 C = 0.010797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.427443 B = 2467.146501 C = 2592.742708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.106 3.894 3 H 0.008 0.992 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.114 3.886 13 C -0.292 4.292 14 C 0.272 3.728 15 O -0.465 6.465 16 N -0.484 5.484 17 H 0.445 0.555 18 N -0.325 5.325 19 H 0.030 0.970 20 H 0.065 0.935 21 H 0.041 0.959 22 H 0.265 0.735 23 H 0.154 0.846 24 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -5.369 10.190 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.026 0.974 4 C -0.560 4.560 5 H 0.061 0.939 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.205 1.205 12 C -0.051 4.051 13 C -0.322 4.322 14 C 0.100 3.900 15 O -0.272 6.272 16 N -0.203 5.203 17 H 0.291 0.709 18 N -0.152 5.152 19 H 0.049 0.951 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.172 0.828 24 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 1.010 -4.902 9.840 11.040 hybrid contribution -0.216 -0.561 -0.167 0.624 sum 0.794 -5.463 9.673 11.138 Atomic orbital electron populations 1.21568 0.95752 1.00007 1.00202 1.17244 0.93875 0.93517 0.86791 0.97354 1.21170 1.31552 1.12211 0.91041 0.93887 1.25651 0.95171 0.95671 1.01561 1.69997 1.37321 1.23685 1.24223 0.85495 0.78308 0.78479 0.79284 1.19879 1.19836 1.20518 1.22791 0.91478 0.95165 0.95643 1.21250 1.05977 1.03634 1.01300 1.18581 0.90111 0.87451 0.93828 1.84845 1.74108 1.28954 1.39290 1.46721 1.23673 1.24250 1.25702 0.70857 1.77402 1.21998 1.14300 1.01508 0.95083 0.91655 0.94018 0.92614 0.82790 0.71772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.56 71.98 0.62 -5.04 14 2 C 0.11 5.65 2.76 -12.28 -0.03 5.62 14 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 14 4 C -0.52 -29.86 8.54 25.60 0.22 -29.64 14 5 H 0.04 2.52 7.74 -2.91 -0.02 2.50 14 6 C 0.02 1.04 5.31 84.65 0.45 1.49 14 7 N -0.91 -52.55 11.33 21.45 0.24 -52.30 14 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 14 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 14 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 14 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 14 12 C 0.11 5.35 6.06 43.09 0.26 5.61 14 13 C -0.29 -11.49 10.00 22.12 0.22 -11.27 14 14 C 0.27 8.72 8.43 83.65 0.71 9.43 14 15 O -0.47 -10.63 13.65 -90.88 -1.24 -11.87 14 16 N -0.48 -15.94 7.36 -169.17 -1.25 -17.19 14 17 H 0.45 10.78 8.96 -213.34 -1.91 8.87 14 18 N -0.32 -14.38 12.69 -47.41 -0.60 -14.98 14 19 H 0.03 1.32 8.14 -2.39 -0.02 1.30 14 20 H 0.06 3.46 6.08 -2.38 -0.01 3.44 14 21 H 0.04 1.88 7.30 -2.39 -0.02 1.86 14 22 H 0.26 14.31 8.31 -92.71 -0.77 13.54 14 23 H 0.15 5.72 7.42 -2.91 -0.02 5.70 14 24 H 0.42 4.51 9.06 -74.06 -0.67 3.84 14 Total: -1.00 -67.75 216.71 0.27 -67.48 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.35 Total: 6.29 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 2.44 Total: -23.81 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.60 Total: -84.47 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.24 Total: -11.87 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.75 0.27 -67.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993836.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.851 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds