Wall clock time and date at job start Mon Mar 30 2020 01:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34333 * 126.16320 * 2 1 4 4 O 1.34749 * 107.10988 * 179.97438 * 3 2 1 5 5 C 1.33963 * 107.76096 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.62374 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47335 * 165.02094 * 6 5 4 8 8 N 1.46899 * 109.46944 * 45.02266 * 6 5 4 9 9 C 1.50694 * 109.47149 * 285.02355 * 6 5 4 10 10 H 1.08003 * 120.00150 * 24.51370 * 9 6 5 11 11 C 1.37878 * 120.00136 * 204.50986 * 9 6 5 12 12 N 1.31514 * 119.99934 * 353.33291 * 11 9 6 13 13 Si 1.86799 * 120.00165 * 173.32643 * 11 9 6 14 14 H 1.48500 * 109.46990 * 270.00438 * 13 11 9 15 15 H 1.48494 * 109.47044 * 30.00086 * 13 11 9 16 16 H 1.48496 * 109.47193 * 150.00415 * 13 11 9 17 17 N 1.30259 * 108.75577 * 0.25812 * 5 4 3 18 18 H 1.09009 * 109.46733 * 90.02349 * 1 2 3 19 19 H 1.09001 * 109.47028 * 210.01821 * 1 2 3 20 20 H 1.09003 * 109.47418 * 330.02720 * 1 2 3 21 21 H 1.08004 * 126.44498 * 0.02562 * 3 2 1 22 22 H 1.00902 * 111.00548 * 183.72742 * 8 6 5 23 23 H 1.00898 * 111.00445 * 307.68663 * 8 6 5 24 24 H 0.97007 * 120.00032 * 2.86201 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 0.0006 5 6 3.5431 -0.6946 0.0003 6 6 4.7480 -1.5998 0.0003 7 1 4.4422 -2.6118 0.2657 8 7 5.7274 -1.1114 0.9801 9 6 5.3709 -1.6068 -1.3719 10 1 5.2220 -0.7690 -2.0369 11 6 6.1311 -2.6829 -1.7784 12 7 6.4221 -3.6417 -0.9266 13 14 6.7475 -2.7790 -3.5391 14 1 5.7460 -3.4873 -4.3762 15 1 6.9523 -1.4065 -4.0675 16 1 8.0340 -3.5198 -3.5734 17 7 2.3006 -1.0855 -0.0059 18 1 -0.3633 -0.0004 -1.0278 19 1 -0.3633 -0.8898 0.5141 20 1 -0.3634 0.8902 0.5134 21 1 1.9769 2.1152 0.0004 22 1 6.5701 -1.6658 0.9564 23 1 5.9327 -0.1349 0.8304 24 1 6.0675 -3.6128 -0.0241 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047150.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:41 Heat of formation + Delta-G solvation = -19.885426 kcal Electronic energy + Delta-G solvation = -10757.478676 eV Core-core repulsion = 8670.857076 eV Total energy + Delta-G solvation = -2086.621600 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.19755 -37.25156 -36.05303 -33.64923 -32.11322 -28.59160 -27.50732 -25.13655 -22.58227 -21.72919 -19.33935 -18.11681 -17.46349 -16.92395 -15.78683 -15.67552 -15.01928 -14.49099 -14.40073 -14.11509 -13.78323 -12.98305 -12.76865 -12.57804 -11.96645 -11.95820 -11.58236 -11.46992 -10.83572 -9.80499 -9.39874 -8.76111 -6.61913 0.59509 1.50345 1.56205 1.74643 1.76979 1.98032 2.46313 3.00765 3.14370 3.93646 4.07378 4.14622 4.54193 4.76588 4.83019 4.92735 5.08477 5.13508 5.42482 5.56758 5.88168 6.23970 6.33735 6.60503 6.92027 7.17897 8.54838 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.056172 B = 0.012008 C = 0.011213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.345797 B = 2331.241489 C = 2496.401392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.045 4.045 3 C -0.099 4.099 4 O -0.214 6.214 5 C 0.229 3.771 6 C 0.284 3.716 7 H 0.052 0.948 8 N -0.841 5.841 9 C -0.645 4.645 10 H 0.042 0.958 11 C -0.008 4.008 12 N -0.912 5.912 13 Si 1.122 2.878 14 H -0.276 1.276 15 H -0.274 1.274 16 H -0.274 1.274 17 N -0.535 5.535 18 H 0.082 0.918 19 H 0.066 0.934 20 H 0.107 0.893 21 H 0.259 0.741 22 H 0.344 0.656 23 H 0.334 0.666 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 8.681 -0.124 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.164 4.164 3 C -0.169 4.169 4 O -0.100 6.100 5 C 0.021 3.979 6 C 0.174 3.826 7 H 0.070 0.930 8 N -0.370 5.370 9 C -0.685 4.685 10 H 0.060 0.940 11 C -0.211 4.211 12 N -0.547 5.547 13 Si 0.942 3.058 14 H -0.202 1.202 15 H -0.199 1.199 16 H -0.199 1.199 17 N -0.267 5.267 18 H 0.101 0.899 19 H 0.085 0.915 20 H 0.126 0.874 21 H 0.275 0.725 22 H 0.157 0.843 23 H 0.145 0.855 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.722 6.978 -0.563 9.705 hybrid contribution -0.163 1.568 0.356 1.616 sum -6.886 8.546 -0.207 10.977 Atomic orbital electron populations 1.20188 0.83638 1.04330 1.03633 1.22646 1.00102 0.87954 1.05700 1.25593 0.79408 1.02443 1.09412 1.84405 1.32047 1.23911 1.69656 1.26742 0.95471 0.79286 0.96359 1.17466 0.83561 0.89874 0.91711 0.93003 1.59398 1.16607 1.07719 1.53326 1.22612 1.36885 1.07492 1.01547 0.93993 1.27330 0.93870 0.91190 1.08676 1.70923 1.41288 1.35417 1.07048 0.82859 0.76755 0.76666 0.69471 1.20154 1.19941 1.19875 1.70319 1.01283 1.33246 1.21808 0.89947 0.91508 0.87446 0.72531 0.84347 0.85503 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.43 71.24 0.74 -0.75 14 2 C -0.04 -1.65 7.11 41.26 0.29 -1.35 14 3 C -0.10 -3.31 12.08 66.93 0.81 -2.50 14 4 O -0.21 -9.29 10.54 -3.66 -0.04 -9.33 14 5 C 0.23 11.35 7.11 88.34 0.63 11.98 14 6 C 0.28 15.10 2.87 43.42 0.12 15.22 14 7 H 0.05 3.04 7.05 -2.39 -0.02 3.03 14 8 N -0.84 -39.65 9.27 -174.97 -1.62 -41.27 14 9 C -0.65 -36.21 8.55 25.60 0.22 -35.99 14 10 H 0.04 2.41 7.81 -2.91 -0.02 2.38 14 11 C -0.01 -0.46 5.45 84.65 0.46 0.00 14 12 N -0.91 -52.78 13.59 21.45 0.29 -52.49 14 13 Si 1.12 48.93 29.91 68.60 2.05 50.98 14 14 H -0.28 -11.61 7.11 99.48 0.71 -10.91 14 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 14 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 14 17 N -0.54 -25.57 11.29 -291.99 -3.30 -28.87 14 18 H 0.08 1.81 8.14 -2.38 -0.02 1.79 14 19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 14 20 H 0.11 1.78 8.14 -2.39 -0.02 1.76 14 21 H 0.26 5.21 8.06 -2.91 -0.02 5.19 14 22 H 0.34 16.33 8.43 -89.69 -0.76 15.57 14 23 H 0.33 14.79 8.74 -89.70 -0.78 14.01 14 24 H 0.26 15.44 6.33 -92.70 -0.59 14.86 14 Total: -1.00 -66.96 220.37 0.54 -66.43 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.13 Total: 27.95 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 3.28 Total: -13.39 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -4.63 Total: -122.63 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.04 Total: -9.33 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -66.96 0.54 -66.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047150.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.540 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds