Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47159 * 2 1 4 4 C 1.50704 * 109.47287 * 239.99444 * 2 1 3 5 5 H 1.07998 * 120.00318 * 245.62693 * 4 2 1 6 6 C 1.37876 * 119.99860 * 65.62448 * 4 2 1 7 7 N 1.31506 * 120.00055 * 197.59711 * 6 4 2 8 8 Si 1.86802 * 119.99814 * 17.60142 * 6 4 2 9 9 H 1.48506 * 109.46947 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47150 * 299.99818 * 8 6 4 11 11 H 1.48501 * 109.47171 * 59.99890 * 8 6 4 12 12 C 1.50702 * 109.46974 * 119.99734 * 2 1 3 13 13 C 1.40852 * 126.72255 * 35.00072 * 12 2 1 14 14 C 1.36689 * 103.91393 * 180.02562 * 13 12 2 15 15 N 1.38249 * 126.89017 * 180.02562 * 14 13 12 16 16 O 1.34250 * 106.21677 * 359.97438 * 14 13 12 17 17 N 1.20901 * 111.47152 * 359.70733 * 16 14 13 18 18 H 1.09002 * 109.47085 * 186.06573 * 1 2 3 19 19 H 1.08998 * 109.47302 * 306.06740 * 1 2 3 20 20 H 1.09003 * 109.46645 * 66.07180 * 1 2 3 21 21 H 0.96998 * 120.00595 * 354.80936 * 7 6 4 22 22 H 1.08000 * 128.04863 * 359.97438 * 13 12 2 23 23 H 0.96999 * 119.99805 * 359.97438 * 15 14 13 24 24 H 0.96997 * 119.99762 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1339 6 6 1.7976 -0.1759 -2.4794 7 7 1.9145 -0.9302 -3.5502 8 14 1.3134 1.6202 -2.6505 9 1 1.1199 1.9461 -4.0864 10 1 0.0483 1.8644 -1.9121 11 1 2.3877 2.4781 -2.0891 12 6 2.0323 -0.7104 1.2305 13 6 1.4411 -1.8223 1.8614 14 6 2.2700 -2.0803 2.9172 15 7 2.1292 -3.0848 3.8566 16 8 3.2487 -1.1633 2.8583 17 7 3.1025 -0.4199 1.9162 18 1 -0.3633 -1.0219 0.1086 19 1 -0.3634 0.6050 0.8307 20 1 -0.3633 0.4168 -0.9394 21 1 2.2384 -1.8409 -3.4690 22 1 0.5415 -2.3482 1.5776 23 1 1.3786 -3.6968 3.8035 24 1 2.7812 -3.1776 4.5688 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211596.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = 54.136931 kcal Electronic energy + Delta-G solvation = -10792.840091 eV Core-core repulsion = 8709.428340 eV Total energy + Delta-G solvation = -2083.411750 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.97478 -35.30308 -35.05068 -32.40418 -30.24884 -28.84989 -24.83903 -23.10491 -21.50070 -19.56377 -17.55151 -17.05809 -16.75003 -16.47528 -14.99567 -13.86810 -13.29856 -12.77199 -12.63033 -11.87273 -11.37925 -11.25343 -10.96550 -10.54985 -10.36131 -9.81806 -9.69362 -9.27699 -8.78368 -8.17902 -7.54299 -6.44747 -4.05431 2.40241 3.06322 3.29623 3.40917 3.48214 3.64269 4.50729 4.66588 5.15932 5.31351 5.85286 6.00753 6.27695 6.43301 6.55997 6.73239 6.99875 7.16982 7.30218 7.40100 7.62625 8.05199 8.39497 8.90900 9.26572 9.61869 10.95240 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.070018 B = 0.011844 C = 0.011585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.801785 B = 2363.446987 C = 2416.386322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.589 4.589 5 H 0.055 0.945 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 1.045 2.955 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.111 3.889 13 C -0.307 4.307 14 C 0.221 3.779 15 N -0.831 5.831 16 O 0.049 5.951 17 N -0.400 5.400 18 H 0.048 0.952 19 H 0.025 0.975 20 H 0.060 0.940 21 H 0.267 0.733 22 H 0.159 0.841 23 H 0.418 0.582 24 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -2.180 12.213 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.061 3.939 3 H 0.055 0.945 4 C -0.627 4.627 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.208 1.208 12 C -0.048 4.048 13 C -0.336 4.336 14 C 0.055 3.945 15 N -0.385 5.385 16 O 0.000 6.000 17 N -0.119 5.119 18 H 0.067 0.933 19 H 0.044 0.956 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.176 0.824 23 H 0.251 0.749 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.109 -0.044 10.976 11.177 hybrid contribution -0.149 -2.215 1.324 2.584 sum -2.258 -2.259 12.300 12.708 Atomic orbital electron populations 1.22178 0.97354 1.00426 1.00003 1.17645 0.92436 0.95313 0.88528 0.94501 1.21782 1.40767 1.09921 0.90277 0.92627 1.25774 0.94548 1.05074 0.91844 1.70858 1.41714 1.09857 1.31398 0.84046 0.77280 0.75278 0.76062 1.21052 1.19851 1.20805 1.23535 0.89919 0.94545 0.96762 1.21550 1.06516 1.05627 0.99866 1.20908 0.91008 0.89783 0.92777 1.40874 1.33356 1.33256 1.31063 1.84834 1.41858 1.33200 1.40156 1.73790 1.21550 1.15334 1.01263 0.93314 0.95570 0.92107 0.92251 0.82361 0.74921 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.61 37.16 0.32 -2.82 14 2 C 0.08 2.04 2.35 -92.92 -0.22 1.83 14 3 H 0.04 0.95 6.79 -51.93 -0.35 0.60 14 4 C -0.59 -17.15 8.81 -34.44 -0.30 -17.45 14 5 H 0.06 1.77 7.99 -52.49 -0.42 1.35 14 6 C 0.03 0.95 5.29 -17.82 -0.09 0.86 14 7 N -0.90 -28.05 13.69 55.43 0.76 -27.29 14 8 Si 1.05 25.47 26.29 -169.99 -4.47 21.00 14 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 14 10 H -0.27 -6.03 5.76 56.52 0.33 -5.70 14 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 12 C 0.11 2.62 6.14 -82.22 -0.50 2.12 14 13 C -0.31 -6.07 10.32 -39.15 -0.40 -6.47 14 14 C 0.22 3.78 8.68 -15.22 -0.13 3.65 14 15 N -0.83 -9.18 9.06 30.82 0.28 -8.90 14 16 O 0.05 0.98 11.21 16.62 0.19 1.16 14 17 N -0.40 -9.37 12.06 33.49 0.40 -8.97 14 18 H 0.05 1.03 7.16 -51.93 -0.37 0.66 14 19 H 0.03 0.50 8.14 -51.93 -0.42 0.08 14 20 H 0.06 1.38 4.89 -51.93 -0.25 1.13 14 21 H 0.27 8.29 8.73 -40.82 -0.36 7.93 14 22 H 0.16 2.84 7.50 -52.49 -0.39 2.44 14 23 H 0.42 3.54 8.95 -40.82 -0.37 3.17 14 24 H 0.40 3.39 8.95 -40.82 -0.37 3.02 14 LS Contribution 211.58 15.07 3.19 3.19 Total: -1.00 -33.05 211.58 -3.16 -36.21 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.17 Total: 1.89 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -1.34 Total: -18.30 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 1.44 Total: -45.16 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.19 Total: 1.16 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.47 Total: 21.00 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -33.05 -3.16 -36.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211596.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.345 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds