Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47159 * 2 1 4 4 C 1.50704 * 109.47287 * 239.99444 * 2 1 3 5 5 H 1.07998 * 120.00318 * 245.62693 * 4 2 1 6 6 C 1.37876 * 119.99860 * 65.62448 * 4 2 1 7 7 N 1.31506 * 120.00055 * 197.59711 * 6 4 2 8 8 Si 1.86802 * 119.99814 * 17.60142 * 6 4 2 9 9 H 1.48506 * 109.46947 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47150 * 299.99818 * 8 6 4 11 11 H 1.48501 * 109.47171 * 59.99890 * 8 6 4 12 12 C 1.50702 * 109.46974 * 119.99734 * 2 1 3 13 13 C 1.40852 * 126.72255 * 35.00072 * 12 2 1 14 14 C 1.36689 * 103.91393 * 180.02562 * 13 12 2 15 15 N 1.38249 * 126.89017 * 180.02562 * 14 13 12 16 16 O 1.34250 * 106.21677 * 359.97438 * 14 13 12 17 17 N 1.20901 * 111.47152 * 359.70733 * 16 14 13 18 18 H 1.09002 * 109.47085 * 186.06573 * 1 2 3 19 19 H 1.08998 * 109.47302 * 306.06740 * 1 2 3 20 20 H 1.09003 * 109.46645 * 66.07180 * 1 2 3 21 21 H 0.96998 * 120.00595 * 354.80936 * 7 6 4 22 22 H 1.08000 * 128.04863 * 359.97438 * 13 12 2 23 23 H 0.96999 * 119.99805 * 359.97438 * 15 14 13 24 24 H 0.96997 * 119.99762 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5763 -1.6385 -1.1339 6 6 1.7976 -0.1759 -2.4794 7 7 1.9145 -0.9302 -3.5502 8 14 1.3134 1.6202 -2.6505 9 1 1.1199 1.9461 -4.0864 10 1 0.0483 1.8644 -1.9121 11 1 2.3877 2.4781 -2.0891 12 6 2.0323 -0.7104 1.2305 13 6 1.4411 -1.8223 1.8614 14 6 2.2700 -2.0803 2.9172 15 7 2.1292 -3.0848 3.8566 16 8 3.2487 -1.1633 2.8583 17 7 3.1025 -0.4199 1.9162 18 1 -0.3633 -1.0219 0.1086 19 1 -0.3634 0.6050 0.8307 20 1 -0.3633 0.4168 -0.9394 21 1 2.2384 -1.8409 -3.4690 22 1 0.5415 -2.3482 1.5776 23 1 1.3786 -3.6968 3.8035 24 1 2.7812 -3.1776 4.5688 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211596.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = 27.468143 kcal Electronic energy + Delta-G solvation = -10793.996536 eV Core-core repulsion = 8709.428340 eV Total energy + Delta-G solvation = -2084.568196 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.59175 -37.17373 -36.30151 -34.44568 -32.12776 -30.30016 -26.85259 -24.93332 -23.13358 -21.20030 -19.69263 -18.61562 -18.40371 -17.61027 -16.62054 -15.72325 -15.24164 -14.65633 -14.28004 -13.71694 -13.25014 -12.81741 -12.57253 -12.38995 -12.13435 -11.61798 -11.54803 -11.23991 -10.74710 -10.36585 -8.88729 -8.77108 -6.39749 0.91821 1.47041 1.56019 1.61459 1.75250 1.80202 2.47788 3.04052 3.37178 3.54699 4.37414 4.43962 4.60033 4.72812 4.92241 4.96074 5.20511 5.39059 5.61161 5.93093 6.00204 6.17372 6.51073 6.70817 7.36456 7.73579 8.60739 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.070018 B = 0.011844 C = 0.011585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.801785 B = 2363.446987 C = 2416.386322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.031 0.969 4 C -0.592 4.592 5 H 0.009 0.991 6 C -0.016 4.016 7 N -0.933 5.933 8 Si 1.083 2.917 9 H -0.284 1.284 10 H -0.232 1.232 11 H -0.273 1.273 12 C 0.078 3.922 13 C -0.329 4.329 14 C 0.247 3.753 15 N -0.796 5.796 16 O 0.051 5.949 17 N -0.433 5.433 18 H 0.053 0.947 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.251 0.749 22 H 0.174 0.826 23 H 0.435 0.565 24 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 -1.880 14.191 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.057 3.943 3 H 0.049 0.951 4 C -0.630 4.630 5 H 0.028 0.972 6 C -0.214 4.214 7 N -0.568 5.568 8 Si 0.903 3.097 9 H -0.210 1.210 10 H -0.155 1.155 11 H -0.198 1.198 12 C -0.079 4.079 13 C -0.359 4.359 14 C 0.079 3.921 15 N -0.354 5.354 16 O 0.002 5.998 17 N -0.153 5.153 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.191 0.809 23 H 0.271 0.729 24 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.249 0.209 13.008 13.409 hybrid contribution 0.296 -2.487 0.862 2.649 sum -2.953 -2.278 13.870 14.363 Atomic orbital electron populations 1.22039 0.94701 1.01477 1.00950 1.17574 0.94518 0.94515 0.87700 0.95130 1.21893 1.40051 1.08409 0.92662 0.97215 1.27253 0.94076 1.08645 0.91410 1.70992 1.43987 1.09412 1.32449 0.83612 0.79202 0.70189 0.76675 1.21019 1.15548 1.19836 1.23527 0.91020 0.96288 0.97055 1.21635 1.07918 1.05470 1.00851 1.21043 0.89013 0.89373 0.92672 1.40958 1.34007 1.30967 1.29467 1.84748 1.42378 1.33503 1.39206 1.73755 1.22058 1.17066 1.02459 0.92806 0.92468 0.92636 0.93980 0.80856 0.72867 0.74808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.61 71.98 0.62 -5.04 14 2 C 0.08 3.86 2.35 -12.28 -0.03 3.83 14 3 H 0.03 1.56 6.79 -2.39 -0.02 1.54 14 4 C -0.59 -35.28 8.81 25.60 0.23 -35.05 14 5 H 0.01 0.64 7.99 -2.91 -0.02 0.61 14 6 C -0.02 -0.94 5.29 84.66 0.45 -0.49 14 7 N -0.93 -59.42 13.69 21.45 0.29 -59.12 14 8 Si 1.08 50.56 26.29 68.60 1.80 52.36 14 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 14 10 H -0.23 -9.30 5.76 99.48 0.57 -8.73 14 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 14 12 C 0.08 3.67 6.14 43.41 0.27 3.93 14 13 C -0.33 -12.48 10.32 22.55 0.23 -12.24 14 14 C 0.25 7.84 8.68 83.32 0.72 8.57 14 15 N -0.80 -14.37 9.06 -166.78 -1.51 -15.88 14 16 O 0.05 1.96 11.21 69.66 0.78 2.74 14 17 N -0.43 -20.15 12.06 -48.92 -0.59 -20.74 14 18 H 0.05 2.18 7.16 -2.39 -0.02 2.16 14 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 14 20 H 0.05 2.37 4.89 -2.39 -0.01 2.36 14 21 H 0.25 16.30 8.73 -92.71 -0.81 15.49 14 22 H 0.17 5.86 7.50 -2.91 -0.02 5.84 14 23 H 0.44 5.43 8.95 -92.71 -0.83 4.60 14 24 H 0.42 5.22 8.95 -92.71 -0.83 4.39 14 Total: -1.00 -73.57 211.58 2.67 -70.90 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -0.59 Total: 6.24 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 2.49 Total: -36.50 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -1.81 Total: -95.74 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.78 Total: 2.74 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.80 Total: 52.36 kcal Total: -73.57 2.67 -70.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211596.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.366 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds