Wall clock time and date at job start Mon Mar 30 2020 01:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47015 * 2 1 4 4 C 1.50699 * 109.47034 * 120.00343 * 2 1 3 5 5 H 1.08003 * 119.99932 * 120.00356 * 4 2 1 6 6 C 1.37876 * 120.00120 * 299.99319 * 4 2 1 7 7 N 1.31512 * 120.00117 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00025 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47309 * 90.00321 * 8 6 4 10 10 H 1.48503 * 109.47158 * 210.00502 * 8 6 4 11 11 H 1.48501 * 109.47048 * 330.00311 * 8 6 4 12 12 C 1.50706 * 109.46722 * 240.00393 * 2 1 3 13 13 C 1.40853 * 126.72351 * 325.27424 * 12 2 1 14 14 C 1.36673 * 103.91396 * 180.10730 * 13 12 2 15 15 N 1.38255 * 126.89290 * 179.90864 * 14 13 12 16 16 O 1.34254 * 106.22040 * 359.65008 * 14 13 12 17 17 N 1.20901 * 111.46985 * 0.23620 * 16 14 13 18 18 H 1.09006 * 109.46413 * 299.99781 * 1 2 3 19 19 H 1.08992 * 109.46968 * 59.99316 * 1 2 3 20 20 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 21 21 H 0.96997 * 120.00652 * 179.97438 * 7 6 4 22 22 H 1.08004 * 128.04405 * 359.97438 * 13 12 2 23 23 H 0.96998 * 120.00164 * 179.71623 * 15 14 13 24 24 H 0.97000 * 119.99241 * 359.71412 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6035 8 14 2.3227 -1.1197 4.0079 9 1 3.6306 -0.5443 4.4118 10 1 1.3446 -0.9492 5.1123 11 1 2.4881 -2.5655 3.7120 12 6 2.0323 -0.7104 -1.2306 13 6 1.4382 -1.8189 -1.8646 14 6 2.2699 -2.0804 -2.9171 15 7 2.1288 -3.0844 -3.8571 16 8 3.2485 -1.1631 -2.8586 17 7 3.0990 -0.4158 -1.9200 18 1 -0.3632 0.5138 0.8901 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 0.7084 1.1608 3.4844 22 1 0.5363 -2.3422 -1.5831 23 1 2.7806 -3.1770 -4.5694 24 1 1.3778 -3.6961 -3.8041 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211604.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:41 Heat of formation + Delta-G solvation = 29.754639 kcal Electronic energy + Delta-G solvation = -10758.825355 eV Core-core repulsion = 8674.356309 eV Total energy + Delta-G solvation = -2084.469046 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.51208 -37.03382 -36.23042 -34.30604 -31.55230 -30.21612 -27.27483 -24.98804 -23.02232 -21.30539 -18.86798 -18.47242 -18.02550 -17.52972 -16.72859 -16.19904 -14.81534 -14.54794 -13.91605 -13.53545 -12.91672 -12.83787 -12.49961 -12.40974 -12.23896 -11.86423 -11.68642 -11.39902 -10.51814 -10.43211 -8.80913 -8.13836 -6.28795 0.99845 1.41407 1.42626 1.53038 1.71841 1.87552 2.43805 3.12993 3.45639 3.69386 4.47843 4.56218 4.84365 4.90988 5.06848 5.17989 5.43116 5.56498 5.79034 6.00814 6.24223 6.25158 6.75727 6.78021 7.38487 7.83427 8.91790 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.062365 B = 0.011503 C = 0.010897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.861259 B = 2433.659171 C = 2568.819284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.104 3.896 3 H 0.001 0.999 4 C -0.525 4.525 5 H 0.045 0.955 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.268 1.268 12 C 0.076 3.924 13 C -0.325 4.325 14 C 0.245 3.755 15 N -0.796 5.796 16 O 0.050 5.950 17 N -0.437 5.437 18 H 0.066 0.934 19 H 0.027 0.973 20 H 0.044 0.956 21 H 0.266 0.734 22 H 0.175 0.825 23 H 0.420 0.580 24 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -8.579 -9.675 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.019 0.981 4 C -0.563 4.563 5 H 0.063 0.937 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.193 1.193 12 C -0.081 4.081 13 C -0.355 4.355 14 C 0.077 3.923 15 N -0.354 5.354 16 O 0.001 5.999 17 N -0.157 5.157 18 H 0.084 0.916 19 H 0.046 0.954 20 H 0.063 0.937 21 H 0.075 0.925 22 H 0.192 0.808 23 H 0.251 0.749 24 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 0.235 -7.485 -9.454 12.060 hybrid contribution -0.332 -0.818 0.742 1.153 sum -0.097 -8.303 -8.712 12.035 Atomic orbital electron populations 1.21548 0.95499 1.00132 1.00122 1.17184 0.94136 0.93163 0.87010 0.98056 1.21131 1.31776 1.12473 0.90952 0.93710 1.25723 0.95040 0.95707 1.01771 1.69997 1.37093 1.23788 1.24428 0.85485 0.78101 0.78982 0.78666 1.20454 1.19931 1.19276 1.23784 0.90964 0.96083 0.97292 1.21624 1.07513 1.05502 1.00852 1.21048 0.89045 0.89462 0.92735 1.40937 1.33984 1.31118 1.29408 1.84750 1.42350 1.33232 1.39554 1.73767 1.22723 1.16705 1.02515 0.91572 0.95359 0.93736 0.92509 0.80776 0.74876 0.72894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 8.58 71.98 0.62 -5.07 14 2 C 0.10 5.74 2.77 -12.28 -0.03 5.71 14 3 H 0.00 0.08 8.14 -2.39 -0.02 0.06 14 4 C -0.52 -30.54 8.55 25.60 0.22 -30.32 14 5 H 0.04 2.63 7.74 -2.91 -0.02 2.61 14 6 C 0.02 0.95 5.30 84.65 0.45 1.40 14 7 N -0.91 -53.37 11.32 21.45 0.24 -53.13 14 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 14 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 14 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 12 C 0.08 3.69 6.14 43.42 0.27 3.96 14 13 C -0.33 -12.59 10.36 22.54 0.23 -12.36 14 14 C 0.25 7.90 8.68 83.32 0.72 8.62 14 15 N -0.80 -14.54 9.06 -166.78 -1.51 -16.05 14 16 O 0.05 1.98 11.21 69.62 0.78 2.76 14 17 N -0.44 -20.98 12.06 -48.93 -0.59 -21.57 14 18 H 0.07 3.57 6.07 -2.38 -0.01 3.55 14 19 H 0.03 1.24 8.14 -2.39 -0.02 1.23 14 20 H 0.04 2.03 7.48 -2.39 -0.02 2.01 14 21 H 0.27 14.56 8.31 -92.71 -0.77 13.79 14 22 H 0.17 5.99 7.64 -2.91 -0.02 5.96 14 23 H 0.42 5.29 8.95 -92.71 -0.83 4.46 14 24 H 0.44 5.47 8.95 -92.71 -0.83 4.64 14 Total: -1.00 -68.98 216.31 3.00 -65.98 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -0.43 Total: 3.58 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 2.47 Total: -28.06 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.86 Total: -90.75 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.78 Total: 2.76 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.98 3.00 -65.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211604.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.734 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds