Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47043 * 2 1 4 4 C 1.36185 * 116.99765 * 180.02562 * 3 2 1 5 5 C 1.40501 * 126.05386 * 359.69349 * 4 3 2 6 6 N 1.30949 * 108.41047 * 179.81615 * 5 4 3 7 7 N 1.40084 * 108.35780 * 0.43821 * 6 5 4 8 8 C 1.37328 * 126.09565 * 179.71949 * 7 6 5 9 9 H 1.08003 * 119.99935 * 180.02562 * 8 7 6 10 10 C 1.38984 * 120.00421 * 0.02562 * 8 7 6 11 11 N 1.31299 * 119.99734 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00436 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47328 * 89.99452 * 12 10 8 14 14 H 1.48503 * 109.47012 * 209.99889 * 12 10 8 15 15 H 1.48501 * 109.46883 * 329.99784 * 12 10 8 16 16 C 1.35507 * 126.04986 * 179.97438 * 4 3 2 17 17 H 1.08999 * 109.47410 * 59.99845 * 1 2 3 18 18 H 1.08994 * 109.47191 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47115 * 299.99662 * 1 2 3 20 20 H 1.09004 * 109.46613 * 240.00267 * 2 1 3 21 21 H 1.08999 * 109.47410 * 120.00155 * 2 1 3 22 22 H 1.08004 * 125.79209 * 359.97438 * 5 4 3 23 23 H 0.96998 * 120.00045 * 180.02562 * 11 10 8 24 24 H 1.07998 * 126.23799 * 359.96498 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3564 1.5257 -0.0005 5 6 4.3250 0.5079 0.0050 6 7 5.5101 1.0648 -0.0016 7 7 5.3440 2.4558 -0.0013 8 6 6.3499 3.3907 -0.0016 9 1 6.1086 4.4435 -0.0009 10 6 7.6783 2.9823 -0.0028 11 7 7.9717 1.7025 -0.0031 12 14 9.0466 4.2541 -0.0025 13 1 9.4099 4.5899 1.3977 14 1 10.2342 3.7035 -0.7037 15 1 8.5832 5.4798 -0.7012 16 6 4.0035 2.7163 -0.0011 17 1 -0.3634 0.5138 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5138 0.8901 20 1 1.8932 -0.5138 -0.8901 21 1 1.8934 -0.5138 0.8899 22 1 4.1258 -0.5536 0.0108 23 1 8.8988 1.4174 -0.0035 24 1 3.5430 3.6932 -0.0018 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218671.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = 16.209656 kcal Electronic energy + Delta-G solvation = -10583.707594 eV Core-core repulsion = 8498.651194 eV Total energy + Delta-G solvation = -2085.056400 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.53565 -38.78198 -35.34302 -32.50129 -32.21484 -29.44230 -26.80687 -24.19756 -22.27644 -21.46190 -19.63811 -17.71434 -17.15286 -16.77988 -15.72809 -15.37490 -15.16779 -14.96933 -13.59138 -13.44010 -13.34303 -13.05332 -12.81104 -12.77313 -12.18837 -12.06003 -11.63628 -11.12377 -10.76450 -10.17143 -8.65964 -8.48608 -6.26040 1.28713 1.40721 1.58772 1.74403 2.09675 2.25849 2.56182 2.98413 3.06113 4.18354 4.25944 4.29065 4.50888 4.67001 4.86767 4.91484 5.04727 5.07463 5.27868 5.39903 5.70743 6.03160 6.62610 6.96049 7.41043 7.60217 8.51495 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.133779 B = 0.009372 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 209.250327 B = 2986.816656 C = 3175.618831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.327 6.327 4 C -0.065 4.065 5 C -0.114 4.114 6 N -0.295 5.295 7 N -0.165 5.165 8 C -0.354 4.354 9 H 0.137 0.863 10 C -0.006 4.006 11 N -0.824 5.824 12 Si 1.022 2.978 13 H -0.263 1.263 14 H -0.273 1.273 15 H -0.247 1.247 16 C -0.094 4.094 17 H 0.063 0.937 18 H 0.100 0.900 19 H 0.063 0.937 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.176 0.824 23 H 0.278 0.722 24 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 0.327 -0.008 6.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.241 6.241 4 C -0.121 4.121 5 C -0.287 4.287 6 N -0.130 5.130 7 N 0.062 4.938 8 C -0.485 4.485 9 H 0.154 0.846 10 C -0.218 4.218 11 N -0.453 5.453 12 Si 0.841 3.159 13 H -0.188 1.188 14 H -0.198 1.198 15 H -0.170 1.170 16 C -0.241 4.241 17 H 0.082 0.918 18 H 0.119 0.881 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.193 0.807 23 H 0.088 0.912 24 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.094 0.096 -0.018 5.095 hybrid contribution -0.211 0.058 0.015 0.219 sum -5.305 0.154 -0.003 5.307 Atomic orbital electron populations 1.21745 0.90861 1.03984 1.03054 1.22782 0.96912 0.81834 1.00653 1.85797 1.16711 1.29422 1.92145 1.18352 0.83305 0.92910 1.17497 1.24020 0.90994 0.99702 1.14032 1.78012 1.20360 0.87795 1.26816 1.44795 1.03599 1.04352 1.41080 1.20613 0.84970 0.88808 1.54146 0.84568 1.26885 1.01355 0.99444 0.94088 1.70368 1.20688 1.16849 1.37347 0.84553 0.75156 0.76928 0.79311 1.18783 1.19798 1.17020 1.21530 0.84236 0.98596 1.19709 0.91829 0.88091 0.91833 0.93144 0.93133 0.80737 0.91212 0.80752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 10.28 71.98 0.74 -2.45 14 2 C 0.05 1.72 5.81 71.98 0.42 2.14 14 3 O -0.33 -13.91 10.23 -95.65 -0.98 -14.89 14 4 C -0.06 -3.22 6.97 22.19 0.15 -3.06 14 5 C -0.11 -5.93 11.09 85.38 0.95 -4.99 14 6 N -0.29 -17.64 10.41 -56.54 -0.59 -18.23 14 7 N -0.17 -9.58 3.74 -190.09 -0.71 -10.29 14 8 C -0.35 -19.42 10.25 84.01 0.86 -18.56 14 9 H 0.14 6.60 7.83 -2.91 -0.02 6.58 14 10 C -0.01 -0.33 5.50 84.95 0.47 0.14 14 11 N -0.82 -47.33 11.82 21.66 0.26 -47.07 14 12 Si 1.02 38.91 29.55 68.60 2.03 40.93 14 13 H -0.26 -9.62 7.11 99.48 0.71 -8.91 14 14 H -0.27 -10.14 7.11 99.48 0.71 -9.44 14 15 H -0.25 -8.65 7.11 99.48 0.71 -7.94 14 16 C -0.09 -4.88 11.49 83.33 0.96 -3.93 14 17 H 0.06 1.43 8.14 -2.39 -0.02 1.41 14 18 H 0.10 1.68 8.14 -2.39 -0.02 1.66 14 19 H 0.06 1.43 8.14 -2.38 -0.02 1.41 14 20 H 0.05 1.58 8.10 -2.39 -0.02 1.56 14 21 H 0.05 1.58 8.09 -2.39 -0.02 1.56 14 22 H 0.18 7.77 7.70 -2.91 -0.02 7.74 14 23 H 0.28 14.55 8.31 -92.71 -0.77 13.78 14 24 H 0.18 7.82 8.06 -2.91 -0.02 7.80 14 Total: -1.00 -68.80 220.95 5.74 -63.06 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.19 Total: 17.21 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.55 Total: -30.72 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -1.04 Total: -75.59 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.98 Total: -14.89 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Total: -68.80 5.74 -63.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218671.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.272 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds