Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35248 * 116.99673 * 2 1 4 4 C 1.40106 * 126.90276 * 269.68306 * 3 2 1 5 5 C 1.40898 * 126.47795 * 359.96094 * 4 3 2 6 6 H 1.08003 * 120.00380 * 0.02562 * 5 4 3 7 7 C 1.39581 * 119.99916 * 180.02562 * 5 4 3 8 8 N 1.31183 * 119.99738 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47092 * 119.99919 * 9 7 5 12 12 H 1.48496 * 109.47387 * 240.00302 * 9 7 5 13 13 N 1.35980 * 107.03890 * 179.84360 * 4 3 2 14 14 C 1.30133 * 109.27934 * 0.43119 * 13 4 3 15 15 N 1.36331 * 109.76501 * 359.72709 * 14 13 4 16 16 C 1.46501 * 126.13626 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.47187 * 300.00402 * 1 2 3 18 18 H 1.09001 * 109.46558 * 60.00450 * 1 2 3 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 0.96999 * 119.99521 * 179.97438 * 8 7 5 21 21 H 1.08002 * 125.11319 * 179.74592 * 14 13 4 22 22 H 1.09006 * 109.47218 * 269.97526 * 16 15 14 23 23 H 1.08995 * 109.47223 * 29.97244 * 16 15 14 24 24 H 1.08993 * 109.47206 * 149.97471 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 6 2.4304 1.9519 -1.1203 5 6 2.2548 1.5891 -2.4704 6 1 1.7793 0.6521 -2.7204 7 6 2.6954 2.4406 -3.4849 8 7 3.2734 3.5784 -3.1812 9 14 2.4620 1.9600 -5.2748 10 1 1.7883 0.6386 -5.3487 11 1 1.6255 2.9803 -5.9563 12 1 3.7860 1.8790 -5.9424 13 7 3.0055 3.0942 -0.6583 14 6 2.9994 3.0824 0.6429 15 7 2.4149 1.9351 1.0909 16 6 2.2204 1.5547 2.4922 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 3.5799 4.1699 -3.8862 21 1 3.3973 3.8641 1.2731 22 1 3.0878 0.9936 2.8401 23 1 2.1011 2.4522 3.0991 24 1 1.3279 0.9354 2.5800 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356410.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = 24.724026 kcal Electronic energy + Delta-G solvation = -10936.092582 eV Core-core repulsion = 8851.405393 eV Total energy + Delta-G solvation = -2084.687189 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.96118 -36.48492 -33.65642 -31.95368 -28.18396 -26.80706 -25.58930 -24.04670 -20.01643 -19.43523 -17.00428 -16.04411 -14.96995 -14.84936 -14.25791 -14.01853 -13.56989 -12.56536 -12.39403 -12.14972 -11.76633 -11.08691 -11.02083 -10.83234 -10.31237 -9.95341 -9.36753 -9.18891 -7.98529 -7.90867 -6.87166 -6.26015 -3.98963 3.03067 3.25878 3.31717 3.35434 3.99717 4.22375 4.58686 5.12122 5.43800 5.75391 5.79386 5.88292 5.91280 6.01200 6.15693 6.34345 6.88116 7.41850 7.53596 7.87502 8.07020 8.56419 8.90184 9.26531 9.30837 9.95527 10.66691 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.053293 B = 0.014976 C = 0.012029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.267360 B = 1869.190359 C = 2327.100191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.281 6.281 3 C -0.057 4.057 4 C 0.210 3.790 5 C -0.435 4.435 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.765 5.765 9 Si 0.905 3.095 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.457 5.457 14 C 0.161 3.839 15 N -0.487 5.487 16 C 0.092 3.908 17 H 0.021 0.979 18 H 0.042 0.958 19 H 0.072 0.928 20 H 0.268 0.732 21 H 0.179 0.821 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -2.073 5.618 6.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.191 6.191 3 C -0.205 4.205 4 C 0.086 3.914 5 C -0.470 4.470 6 H 0.097 0.903 7 C -0.147 4.147 8 N -0.390 5.390 9 Si 0.730 3.270 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.182 5.182 14 C -0.120 4.120 15 N -0.189 5.189 16 C -0.053 4.053 17 H 0.040 0.960 18 H 0.061 0.939 19 H 0.090 0.910 20 H 0.078 0.922 21 H 0.196 0.804 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.439 -1.560 5.127 5.888 hybrid contribution -0.736 -0.624 -0.005 0.965 sum -3.175 -2.184 5.122 6.410 Atomic orbital electron populations 1.23078 0.85022 1.00462 0.99391 1.86179 1.16859 1.23139 1.92921 1.19228 1.20618 0.94582 0.86057 1.18429 0.94137 0.87306 0.91548 1.18512 1.35771 1.04685 0.88002 0.90279 1.25850 0.93805 0.94429 1.00596 1.70192 1.27836 1.07615 1.33385 0.86325 0.78510 0.79418 0.82730 1.18743 1.20303 1.20193 1.71310 1.20468 1.21868 1.04517 1.24796 1.04523 0.89047 0.93599 1.44954 1.50502 1.18561 1.04916 1.21513 1.01369 1.00384 0.81997 0.96036 0.93923 0.90970 0.92182 0.80411 0.92671 0.91486 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.13 101.05 1.12 1.44 14 2 O -0.28 -6.88 10.50 -17.44 -0.18 -7.07 14 3 C -0.06 -1.50 7.12 -14.81 -0.11 -1.61 14 4 C 0.21 6.19 6.71 -84.32 -0.57 5.63 14 5 C -0.44 -12.79 9.36 -38.08 -0.36 -13.15 14 6 H 0.08 2.26 7.84 -52.48 -0.41 1.84 14 7 C 0.07 2.01 5.49 -17.33 -0.10 1.92 14 8 N -0.76 -22.07 11.94 55.53 0.66 -21.40 14 9 Si 0.90 20.36 29.56 -169.99 -5.02 15.33 14 10 H -0.26 -5.83 7.11 56.52 0.40 -5.42 14 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 13 N -0.46 -13.06 9.49 -11.74 -0.11 -13.17 14 14 C 0.16 3.78 12.52 -89.49 -1.12 2.65 14 15 N -0.49 -11.06 3.17 -124.73 -0.39 -11.46 14 16 C 0.09 1.50 11.14 59.85 0.67 2.17 14 17 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 14 18 H 0.04 0.88 8.14 -51.93 -0.42 0.46 14 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 14 20 H 0.27 7.03 8.30 -40.82 -0.34 6.69 14 21 H 0.18 3.29 8.06 -52.49 -0.42 2.87 14 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 14 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 14 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 LS Contribution 222.49 15.07 3.35 3.35 Total: -1.00 -33.50 222.49 -4.66 -38.16 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -2.51 Total: -2.80 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.45 Total: -0.95 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.16 Total: -46.03 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.18 Total: -7.07 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -33.50 -4.66 -38.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356410.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.884 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds