Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40125 * 126.16553 * 2 1 4 4 H 0.97001 * 125.91025 * 0.03899 * 3 2 1 5 5 C 1.36598 * 108.17690 * 180.16420 * 3 2 1 6 6 C 1.50700 * 125.76944 * 179.84325 * 5 3 2 7 7 C 1.50702 * 109.46869 * 274.71183 * 6 5 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.34821 * 108.45576 * 359.57625 * 5 3 2 16 16 C 1.34867 * 126.16498 * 179.69092 * 2 1 3 17 17 O 1.21786 * 126.19302 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.47555 * 180.28376 * 1 2 3 19 19 H 1.09007 * 109.47499 * 300.27902 * 1 2 3 20 20 H 1.08999 * 109.47460 * 60.27877 * 1 2 3 21 21 H 1.09004 * 109.47210 * 154.71477 * 6 5 3 22 22 H 1.08994 * 109.47551 * 34.71129 * 6 5 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 24 24 H 1.07995 * 125.96131 * 180.28660 * 15 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2919 1.1313 0.0000 4 1 1.9933 2.0542 0.0005 5 6 3.5911 0.7094 -0.0037 6 6 4.8065 1.6003 -0.0084 7 6 5.1381 1.9901 -1.4258 8 1 4.5294 1.6292 -2.2417 9 6 6.2150 2.8127 -1.6807 10 7 6.9560 3.2525 -0.6872 11 14 6.6214 3.3020 -3.4370 12 1 5.9008 4.5539 -3.7814 13 1 8.0845 3.5224 -3.5634 14 1 6.2022 2.2189 -4.3623 15 6 3.6021 -0.6387 0.0034 16 6 2.2608 -1.0888 0.0059 17 8 1.8917 -2.2494 0.0117 18 1 -0.3634 -1.0276 0.0051 19 1 -0.3634 0.5182 0.8875 20 1 -0.3634 0.5095 -0.8924 21 1 5.6503 1.0661 0.4284 22 1 4.6020 2.4970 0.5766 23 1 7.7139 3.8309 -0.8665 24 1 4.4814 -1.2658 0.0071 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260493023.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = 30.550063 kcal Electronic energy + Delta-G solvation = -10568.463688 eV Core-core repulsion = 8484.029134 eV Total energy + Delta-G solvation = -2084.434554 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.80744 -36.45212 -33.92521 -32.49245 -29.29128 -29.06601 -25.82254 -23.25521 -20.21523 -19.85401 -17.44554 -16.53298 -15.41679 -15.10893 -14.69834 -14.03835 -13.00192 -12.96852 -12.56903 -12.38909 -12.28598 -11.59727 -11.45377 -10.87462 -10.81574 -10.13183 -9.67596 -9.13290 -8.60620 -8.45032 -7.24752 -6.23683 -4.29397 2.23963 2.46673 3.21248 3.29104 3.33968 3.99525 4.31550 4.40183 5.12622 5.21697 5.33148 5.58020 5.76703 6.18276 6.39667 6.63022 7.05898 7.19838 7.30640 7.71370 7.88053 7.98820 8.16988 8.74527 8.89970 9.36368 10.86141 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067350 B = 0.009871 C = 0.009729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.640057 B = 2835.804970 C = 2877.401615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.436 5.436 3 N -0.500 5.500 4 H 0.437 0.563 5 C 0.244 3.756 6 C 0.064 3.936 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.889 5.889 11 Si 0.901 3.099 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.272 1.272 15 C -0.385 4.385 16 C 0.533 3.467 17 O -0.581 6.581 18 H 0.099 0.901 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.039 0.961 23 H 0.266 0.734 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 0.396 1.054 8.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.260 5.260 3 N -0.222 5.222 4 H 0.281 0.719 5 C 0.127 3.873 6 C 0.025 3.975 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.527 5.527 11 Si 0.729 3.271 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.196 1.196 15 C -0.414 4.414 16 C 0.334 3.666 17 O -0.463 6.463 18 H 0.118 0.882 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.718 -0.123 1.104 8.788 hybrid contribution 0.050 0.916 -0.970 1.335 sum -8.668 0.794 0.134 8.705 Atomic orbital electron populations 1.21690 0.75797 1.04672 1.01561 1.48187 1.03505 1.00006 1.74290 1.44123 1.01276 1.01347 1.75484 0.71861 1.22100 0.84270 0.95511 0.85425 1.18348 0.86876 0.93236 0.99017 1.20921 1.13533 1.30493 0.91186 0.92028 1.24980 0.95721 0.95586 0.97698 1.69936 1.17847 1.33767 1.31145 0.86432 0.77675 0.78889 0.84138 1.20574 1.20943 1.19626 1.21516 0.97040 0.94297 1.28548 1.17127 0.87335 0.83311 0.78834 1.90760 1.80952 1.16310 1.58318 0.88237 0.91925 0.91869 0.92268 0.94291 0.92459 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 11.53 59.85 0.69 1.99 14 2 N -0.44 -7.76 4.02 -70.06 -0.28 -8.04 14 3 N -0.50 -8.72 7.30 33.67 0.25 -8.48 14 4 H 0.44 6.18 8.96 -182.58 -1.64 4.54 14 5 C 0.24 5.05 6.39 -81.68 -0.52 4.53 14 6 C 0.06 1.48 5.51 -29.03 -0.16 1.32 14 7 C -0.52 -13.47 9.09 -34.44 -0.31 -13.78 14 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 14 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 14 10 N -0.89 -24.35 13.29 55.43 0.74 -23.61 14 11 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 14 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 14 15 C -0.38 -8.35 10.73 -39.56 -0.42 -8.78 14 16 C 0.53 11.61 7.95 -14.99 -0.12 11.49 14 17 O -0.58 -14.06 17.65 5.11 0.09 -13.97 14 18 H 0.10 1.26 7.76 -51.93 -0.40 0.85 14 19 H 0.06 0.63 8.14 -51.93 -0.42 0.20 14 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 14 21 H 0.06 1.44 8.14 -51.93 -0.42 1.02 14 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 14 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 14 24 H 0.15 3.24 8.06 -52.49 -0.42 2.82 14 LS Contribution 223.16 15.07 3.36 3.36 Total: -1.00 -31.19 223.16 -5.51 -36.70 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.69 Total: 0.40 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.95 Total: -1.68 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.70 Total: -40.13 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.19 -5.51 -36.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260493023.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.246 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds