Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40075 * 125.98695 * 2 1 4 4 C 1.31111 * 108.18524 * 180.02562 * 3 2 1 5 5 O 1.35996 * 125.95399 * 179.97438 * 4 3 2 6 6 C 1.40288 * 108.08693 * 0.02562 * 4 3 2 7 7 C 1.34943 * 125.98981 * 180.02562 * 2 1 3 8 8 C 1.50698 * 126.08532 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.46942 * 264.99414 * 8 7 2 10 10 H 1.07995 * 119.99918 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99787 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00236 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99467 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47477 * 59.99716 * 13 11 9 15 15 H 1.48500 * 109.46672 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46851 * 299.99342 * 13 11 9 17 17 H 1.09003 * 109.46960 * 89.97650 * 1 2 3 18 18 H 1.08995 * 109.46735 * 209.97267 * 1 2 3 19 19 H 1.09000 * 109.47309 * 329.97675 * 1 2 3 20 20 H 0.96695 * 114.00149 * 90.02544 * 5 4 3 21 21 H 1.08001 * 126.06013 * 180.02562 * 6 4 3 22 22 H 1.08998 * 109.47443 * 24.99268 * 8 7 2 23 23 H 1.09003 * 109.47206 * 145.00068 * 8 7 2 24 24 H 0.97002 * 119.99963 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1334 0.0000 4 6 3.5364 0.7326 -0.0006 5 8 4.6333 1.5366 -0.0012 6 6 3.5434 -0.6703 -0.0015 7 6 2.2580 -1.0919 -0.0005 8 6 1.7942 -2.5257 -0.0006 9 6 1.7581 -3.0420 1.4148 10 1 2.0421 -2.3963 2.2325 11 6 1.3624 -4.3388 1.6656 12 7 1.0170 -5.1252 0.6698 13 14 1.3170 -4.9785 3.4201 14 1 0.3777 -4.1551 4.2231 15 1 0.8600 -6.3915 3.4200 16 1 2.6766 -4.8975 4.0118 17 1 -0.3633 0.0004 -1.0277 18 1 -0.3632 -0.8902 0.5134 19 1 -0.3634 0.8898 0.5142 20 1 4.9511 1.7690 0.8819 21 1 4.4197 -1.3017 -0.0018 22 1 0.7960 -2.5847 -0.4344 23 1 2.4831 -3.1304 -0.5904 24 1 0.7383 -6.0374 0.8463 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521533.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = 3.868318 kcal Electronic energy + Delta-G solvation = -10619.064835 eV Core-core repulsion = 8533.473274 eV Total energy + Delta-G solvation = -2085.591561 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.18499 -38.24049 -35.45190 -33.41954 -32.59215 -28.95699 -27.14554 -25.22108 -22.24123 -20.93407 -18.70187 -18.38857 -17.41521 -16.48159 -16.43630 -15.42430 -14.91851 -14.49300 -14.28576 -13.44704 -13.34504 -13.27264 -13.00051 -12.61562 -12.52197 -11.79134 -11.65195 -11.19388 -10.61019 -9.95802 -9.43694 -8.23381 -6.36340 0.87683 1.43928 1.45071 1.49928 1.53538 1.74869 2.42021 3.09392 3.13089 3.87397 4.23649 4.44532 4.59671 4.68379 4.82450 4.89389 5.24675 5.48497 5.55165 5.68796 5.98154 6.19974 6.70489 6.72448 6.78892 7.32849 8.86168 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.054133 B = 0.011264 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.122081 B = 2485.205917 C = 2666.827569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.366 5.366 3 N -0.345 5.345 4 C 0.252 3.748 5 O -0.466 6.466 6 C -0.321 4.321 7 C 0.135 3.865 8 C 0.081 3.919 9 C -0.532 4.532 10 H 0.053 0.947 11 C 0.016 3.984 12 N -0.922 5.922 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.271 1.271 17 H 0.087 0.913 18 H 0.092 0.908 19 H 0.104 0.896 20 H 0.416 0.584 21 H 0.149 0.851 22 H 0.026 0.974 23 H 0.028 0.972 24 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 7.099 1.600 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.152 5.152 3 N -0.179 5.179 4 C 0.046 3.954 5 O -0.272 6.272 6 C -0.350 4.350 7 C 0.006 3.994 8 C 0.043 3.957 9 C -0.571 4.571 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.561 5.561 13 Si 0.789 3.211 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.196 1.196 17 H 0.105 0.895 18 H 0.111 0.889 19 H 0.123 0.877 20 H 0.275 0.725 21 H 0.167 0.833 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.450 7.939 0.948 8.008 hybrid contribution 0.652 -1.138 1.130 1.731 sum 0.202 6.801 2.078 7.114 Atomic orbital electron populations 1.22101 0.72201 1.05423 1.04421 1.48324 1.07324 1.02003 1.57500 1.77087 1.01832 1.09157 1.29798 1.19848 0.86398 0.88701 1.00439 1.84781 1.38891 1.68061 1.35474 1.21418 0.97448 0.94360 1.21811 1.21756 0.90789 0.91835 0.94971 1.17824 0.96616 0.83655 0.97640 1.21132 1.46192 0.97642 0.92092 0.92862 1.25778 0.94319 0.96733 1.01513 1.70030 1.45034 1.07937 1.33091 0.85510 0.78846 0.77347 0.79420 1.19306 1.20565 1.19600 0.89452 0.88919 0.87742 0.72505 0.83343 0.95565 0.95370 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 11.06 127.77 1.41 4.47 14 2 N -0.37 -14.79 4.01 -356.06 -1.43 -16.22 14 3 N -0.34 -14.04 12.59 -170.48 -2.15 -16.19 14 4 C 0.25 9.88 8.47 85.30 0.72 10.60 14 5 O -0.47 -14.68 13.66 -93.51 -1.28 -15.96 14 6 C -0.32 -13.62 10.73 22.09 0.24 -13.38 14 7 C 0.13 6.04 6.12 41.40 0.25 6.29 14 8 C 0.08 4.06 5.07 29.10 0.15 4.21 14 9 C -0.53 -28.45 9.09 25.60 0.23 -28.22 14 10 H 0.05 2.85 7.74 -2.91 -0.02 2.83 14 11 C 0.02 0.87 5.46 84.66 0.46 1.33 14 12 N -0.92 -51.77 13.29 21.45 0.28 -51.49 14 13 Si 0.96 41.79 29.54 68.60 2.03 43.81 14 14 H -0.27 -11.21 7.11 99.48 0.71 -10.51 14 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 14 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 14 17 H 0.09 2.34 8.14 -2.39 -0.02 2.32 14 18 H 0.09 3.01 7.54 -2.39 -0.02 2.99 14 19 H 0.10 2.69 8.14 -2.39 -0.02 2.67 14 20 H 0.42 8.32 9.06 -74.06 -0.67 7.65 14 21 H 0.15 5.99 8.06 -2.91 -0.02 5.97 14 22 H 0.03 1.32 7.48 -2.39 -0.02 1.31 14 23 H 0.03 1.50 8.14 -2.39 -0.02 1.48 14 24 H 0.27 14.21 8.31 -92.71 -0.77 13.44 14 Total: -1.00 -64.00 223.02 1.47 -62.54 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.54 Total: 8.20 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.47 Total: -14.70 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.29 Total: -83.90 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.28 Total: -15.96 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -64.00 1.47 -62.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521533.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.403 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds