Wall clock time and date at job start Mon Mar 30 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34482 * 126.16119 * 2 1 4 4 C 1.30256 * 108.69793 * 179.97438 * 3 2 1 5 5 O 1.33975 * 108.76212 * 359.73690 * 4 3 2 6 6 C 1.34320 * 126.16668 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.44550 * 359.97438 * 6 2 1 8 8 H 1.08998 * 109.47145 * 15.00130 * 7 6 2 9 9 N 1.46900 * 109.47047 * 135.00354 * 7 6 2 10 10 C 1.50700 * 109.47148 * 255.00108 * 7 6 2 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 H 1.09001 * 109.47117 * 269.99832 * 1 2 3 19 19 H 1.08998 * 109.46845 * 29.99803 * 1 2 3 20 20 H 1.08995 * 109.47042 * 149.99853 * 1 2 3 21 21 H 1.08001 * 125.62211 * 180.02562 * 4 3 2 22 22 H 1.00907 * 110.99867 * 296.04432 * 9 7 6 23 23 H 1.00896 * 111.00376 * 59.99771 * 9 7 6 24 24 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5735 -0.6445 0.0067 6 6 2.2997 -1.0844 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 1 0.7934 -2.5726 -0.2662 9 7 2.6373 -3.2823 -0.9803 10 6 2.0506 -3.1121 1.3716 11 1 2.4630 -2.5058 2.1646 12 6 1.7074 -4.4250 1.6150 13 7 1.2048 -5.1631 0.6495 14 14 1.9562 -5.1556 3.3162 15 1 1.5114 -6.5724 3.3163 16 1 3.3948 -5.0878 3.6783 17 1 1.1597 -4.3871 4.3062 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5138 21 1 4.4066 1.3435 0.0011 22 1 2.4695 -2.9474 -1.9172 23 1 3.6205 -3.2512 -0.7559 24 1 1.0752 -4.7836 -0.2337 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260521537.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:43 Heat of formation + Delta-G solvation = 10.789063 kcal Electronic energy + Delta-G solvation = -10932.531047 eV Core-core repulsion = 8847.239592 eV Total energy + Delta-G solvation = -2085.291455 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.66680 -35.21246 -34.49841 -31.61989 -30.30927 -27.06904 -25.42600 -22.90349 -21.08811 -20.05502 -17.15149 -16.48038 -15.82675 -14.83831 -14.41305 -13.87459 -13.58350 -12.76779 -12.52291 -12.36530 -11.75041 -11.57031 -10.81377 -10.63440 -10.45202 -10.14504 -10.05163 -9.01422 -8.44675 -7.93059 -7.68852 -6.31416 -4.16259 2.18075 3.23530 3.44320 3.45092 3.48632 3.64441 4.52478 4.67219 5.31987 5.49207 5.59670 5.88656 6.05735 6.11615 6.24237 6.40800 6.63067 6.91471 6.99722 7.73397 8.07745 8.30133 8.47843 8.58590 8.90001 9.66053 11.08514 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.051918 B = 0.013131 C = 0.013081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.181715 B = 2131.838417 C = 2140.050745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.057 4.057 3 N -0.485 5.485 4 C 0.125 3.875 5 O -0.202 6.202 6 C -0.010 4.010 7 C 0.283 3.717 8 H 0.065 0.935 9 N -0.827 5.827 10 C -0.615 4.615 11 H 0.048 0.952 12 C 0.042 3.958 13 N -0.884 5.884 14 Si 1.068 2.932 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.288 1.288 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.238 0.762 22 H 0.305 0.695 23 H 0.333 0.667 24 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 7.012 -1.519 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.177 4.177 3 N -0.216 5.216 4 C -0.101 4.101 5 O -0.088 6.088 6 C -0.066 4.066 7 C 0.173 3.827 8 H 0.083 0.917 9 N -0.354 5.354 10 C -0.654 4.654 11 H 0.066 0.934 12 C -0.168 4.168 13 N -0.518 5.518 14 Si 0.896 3.104 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.215 1.215 18 H 0.088 0.912 19 H 0.081 0.919 20 H 0.090 0.910 21 H 0.254 0.746 22 H 0.116 0.884 23 H 0.146 0.854 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.139 5.559 -0.413 5.689 hybrid contribution 1.146 1.999 -1.020 2.520 sum 2.284 7.558 -1.433 8.024 Atomic orbital electron populations 1.19958 0.87121 1.02083 1.02456 1.21414 0.97812 0.87735 1.10727 1.70156 1.01506 1.32361 1.17553 1.27675 0.97239 0.80313 1.04913 1.84432 1.31169 1.23779 1.69382 1.25784 0.79620 1.01163 1.00056 1.18245 0.93708 0.76530 0.94184 0.91724 1.59375 1.12566 1.59914 1.03517 1.21630 1.50597 0.99839 0.93314 0.93390 1.25679 0.93027 0.93371 1.04768 1.70585 1.37538 1.39194 1.04460 0.83585 0.76371 0.76255 0.74218 1.20667 1.21519 1.21496 0.91234 0.91861 0.91015 0.74592 0.88411 0.85390 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.17 36.01 0.37 -0.68 14 2 C -0.06 -1.20 7.11 -82.81 -0.59 -1.79 14 3 N -0.49 -9.67 11.29 -11.17 -0.13 -9.80 14 4 C 0.12 2.19 13.23 52.09 0.69 2.88 14 5 O -0.20 -4.23 10.77 5.33 0.06 -4.17 14 6 C -0.01 -0.22 6.11 -35.69 -0.22 -0.44 14 7 C 0.28 6.94 2.61 -70.01 -0.18 6.75 14 8 H 0.07 1.64 6.70 -51.93 -0.35 1.29 14 9 N -0.83 -18.88 7.78 -6.65 -0.05 -18.93 14 10 C -0.62 -17.07 8.71 -34.44 -0.30 -17.37 14 11 H 0.05 1.38 7.74 -52.49 -0.41 0.97 14 12 C 0.04 1.17 5.39 -17.82 -0.10 1.08 14 13 N -0.88 -25.94 13.51 55.43 0.75 -25.19 14 14 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 14 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 14 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 14 18 H 0.07 1.21 8.14 -51.93 -0.42 0.78 14 19 H 0.06 0.99 8.14 -51.93 -0.42 0.57 14 20 H 0.07 1.24 7.03 -51.93 -0.36 0.87 14 21 H 0.24 2.75 8.06 -52.49 -0.42 2.33 14 22 H 0.31 6.10 9.06 -39.29 -0.36 5.75 14 23 H 0.33 7.56 8.97 -39.29 -0.35 7.21 14 24 H 0.29 8.42 6.39 -40.82 -0.26 8.16 14 LS Contribution 218.15 15.07 3.29 3.29 Total: -1.00 -31.33 218.15 -3.65 -34.98 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.15 Total: 9.60 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.33 Total: -9.58 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.57 Total: -53.92 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: 0.06 Total: -4.17 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.33 -3.65 -34.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521537.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.770 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds