Wall clock time and date at job start Mon Mar 30 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00228 * 2 1 4 4 C 1.50701 * 109.47508 * 179.97438 * 3 2 1 5 5 N 1.31005 * 125.18082 * 179.97438 * 4 3 2 6 6 C 1.33024 * 109.98161 * 180.02562 * 5 4 3 7 7 C 1.39622 * 107.46211 * 359.97438 * 6 5 4 8 8 C 1.40062 * 127.05987 * 180.02562 * 7 6 5 9 9 H 1.07994 * 119.99888 * 179.97438 * 8 7 6 10 10 C 1.40072 * 119.99685 * 359.95753 * 8 7 6 11 11 N 1.30848 * 120.00598 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99627 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47240 * 60.00062 * 12 10 8 14 14 H 1.48498 * 109.46888 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46978 * 299.99914 * 12 10 8 16 16 N 1.35074 * 125.17432 * 0.02562 * 4 3 2 17 17 H 0.97005 * 126.48120 * 359.71668 * 16 4 3 18 18 H 1.09004 * 109.47013 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46666 * 299.99976 * 1 2 3 20 20 H 1.08990 * 109.46993 * 59.99902 * 1 2 3 21 21 H 1.09003 * 109.47277 * 60.00186 * 3 2 1 22 22 H 1.08998 * 109.47421 * 300.00553 * 3 2 1 23 23 H 1.08004 * 126.26823 * 179.97438 * 6 5 4 24 24 H 0.96995 * 120.00436 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.3496 2.1942 0.0003 6 6 5.6017 1.7453 0.0005 7 6 5.5466 0.3501 0.0016 8 6 6.6301 -0.5375 0.0026 9 1 6.4551 -1.6031 0.0038 10 6 7.9405 -0.0428 0.0018 11 7 8.1526 1.2484 -0.0005 12 14 9.3856 -1.2266 0.0024 13 1 9.3246 -2.0830 -1.2092 14 1 10.6557 -0.4572 0.0020 15 1 9.3252 -2.0807 1.2158 16 7 4.2011 0.0243 0.0006 17 1 3.8241 -0.8694 0.0041 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 1.6887 1.8463 0.8900 22 1 1.6886 1.8464 -0.8899 23 1 6.4971 2.3493 -0.0001 24 1 9.0601 1.5909 -0.0007 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260599442.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:41 Heat of formation + Delta-G solvation = -4.923163 kcal Electronic energy + Delta-G solvation = -10563.556957 eV Core-core repulsion = 8477.584169 eV Total energy + Delta-G solvation = -2085.972788 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.82064 -37.34765 -33.60174 -30.80519 -29.56978 -27.25619 -25.72856 -23.26882 -19.86756 -19.09179 -17.48580 -16.12155 -15.57291 -15.42747 -14.91781 -13.84990 -13.31219 -12.65466 -12.07681 -11.94288 -11.90523 -11.19939 -11.19197 -10.87706 -10.66253 -10.19328 -9.57426 -9.28552 -8.30986 -8.23206 -6.85653 -6.59335 -4.20701 3.00970 3.11003 3.13653 3.73070 3.95016 4.02346 4.70625 4.86832 5.36941 5.43440 5.45473 5.69744 5.77525 6.07297 6.17976 6.96145 7.15538 7.40495 7.73969 7.80244 8.05401 8.54489 8.91191 9.04602 9.31168 9.97644 10.36771 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.088271 B = 0.009893 C = 0.008954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.129979 B = 2829.689483 C = 3126.373744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.397 6.397 3 C 0.176 3.824 4 C 0.066 3.934 5 N -0.479 5.479 6 C -0.128 4.128 7 C 0.177 3.823 8 C -0.447 4.447 9 H 0.071 0.929 10 C 0.072 3.928 11 N -0.803 5.803 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.268 1.268 16 N -0.593 5.593 17 H 0.401 0.599 18 H 0.082 0.918 19 H 0.039 0.961 20 H 0.039 0.961 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.187 0.813 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -3.156 0.007 7.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.315 6.315 3 C 0.098 3.902 4 C -0.187 4.187 5 N -0.201 5.201 6 C -0.277 4.277 7 C 0.063 3.937 8 C -0.483 4.483 9 H 0.089 0.911 10 C -0.144 4.144 11 N -0.431 5.431 12 Si 0.752 3.248 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.193 1.193 16 N -0.203 5.203 17 H 0.236 0.764 18 H 0.100 0.900 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.204 0.796 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.685 -2.215 0.003 7.043 hybrid contribution 0.506 -1.589 0.004 1.667 sum -6.179 -3.803 0.007 7.256 Atomic orbital electron populations 1.22671 0.81232 1.02306 0.99843 1.87769 1.19416 1.28870 1.95465 1.20178 0.87033 0.83193 0.99838 1.21485 0.92378 0.83024 1.21836 1.69302 1.02415 1.30771 1.17577 1.23415 0.92806 0.91860 1.19655 1.19109 0.80943 0.95372 0.98259 1.18339 0.89099 0.93282 1.47584 0.91116 1.25657 0.99963 0.95694 0.93115 1.69589 1.22876 1.13055 1.37609 0.86072 0.79127 0.80094 0.79514 1.19252 1.20266 1.19257 1.42732 1.06759 1.07756 1.63100 0.76442 0.89964 0.94205 0.94197 0.92835 0.92828 0.79623 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.01 101.05 1.11 1.56 14 2 O -0.40 -7.00 10.16 -35.23 -0.36 -7.36 14 3 C 0.18 3.40 6.56 36.01 0.24 3.63 14 4 C 0.07 1.66 7.93 -154.96 -1.23 0.43 14 5 N -0.48 -13.37 11.18 -9.76 -0.11 -13.48 14 6 C -0.13 -3.76 10.88 -16.52 -0.18 -3.94 14 7 C 0.18 5.03 6.96 -83.68 -0.58 4.44 14 8 C -0.45 -12.24 9.45 -38.21 -0.36 -12.60 14 9 H 0.07 1.81 7.85 -52.49 -0.41 1.40 14 10 C 0.07 1.86 5.50 -17.28 -0.10 1.77 14 11 N -0.80 -21.46 10.35 55.56 0.57 -20.89 14 12 Si 0.93 19.19 29.56 -169.99 -5.03 14.16 14 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 14 H -0.28 -5.58 7.11 56.52 0.40 -5.17 14 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 16 N -0.59 -15.03 6.05 -7.86 -0.05 -15.08 14 17 H 0.40 9.04 8.55 -40.82 -0.35 8.69 14 18 H 0.08 0.84 8.14 -51.93 -0.42 0.42 14 19 H 0.04 0.43 8.14 -51.93 -0.42 0.01 14 20 H 0.04 0.43 8.14 -51.93 -0.42 0.01 14 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 23 H 0.19 5.60 5.78 -52.48 -0.30 5.30 14 24 H 0.28 6.76 8.30 -40.82 -0.34 6.42 14 LS Contribution 218.09 15.07 3.29 3.29 Total: -1.00 -30.94 218.09 -5.09 -36.03 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -2.31 Total: 8.04 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.10 Total: -4.71 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.42 Total: -49.45 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.36 Total: -7.36 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -30.94 -5.09 -36.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599442.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.110 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds