Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99821 * 2 1 4 4 C 1.39236 * 120.00322 * 179.97438 * 2 1 3 5 5 C 1.40467 * 125.79815 * 5.00729 * 4 2 1 6 6 C 1.39116 * 107.52771 * 179.97438 * 5 4 2 7 7 C 1.40014 * 126.34823 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 6 5 9 9 C 1.40378 * 119.99942 * 180.27447 * 7 6 5 10 10 N 1.30604 * 120.00403 * 359.71918 * 9 7 6 11 11 Si 1.86796 * 120.00193 * 179.72114 * 9 7 6 12 12 H 1.48506 * 109.47393 * 89.99588 * 11 9 7 13 13 H 1.48506 * 109.47524 * 209.99926 * 11 9 7 14 14 H 1.48501 * 109.47048 * 329.99831 * 11 9 7 15 15 O 1.35138 * 107.30063 * 0.25737 * 6 5 4 16 16 N 1.31120 * 125.80427 * 184.99670 * 4 2 1 17 17 H 1.08993 * 109.46774 * 269.99829 * 1 2 3 18 18 H 1.09002 * 109.47029 * 30.00513 * 1 2 3 19 19 H 1.09004 * 109.46634 * 150.00335 * 1 2 3 20 20 H 1.08994 * 109.46785 * 179.97438 * 3 2 1 21 21 H 1.08996 * 109.46851 * 300.00145 * 3 2 1 22 22 H 1.08996 * 109.46915 * 59.99836 * 3 2 1 23 23 H 1.07997 * 126.23390 * 359.97438 * 5 4 2 24 24 H 0.96995 * 120.00313 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1613 -1.2058 0.0005 5 6 1.5893 -2.4849 -0.0983 6 6 2.6262 -3.4116 -0.0604 7 6 2.4977 -4.8040 -0.1313 8 1 1.5194 -5.2519 -0.2246 9 6 3.6399 -5.6181 -0.0746 10 7 4.8229 -5.0765 0.0387 11 14 3.4679 -7.4761 -0.1613 12 1 3.5307 -7.9135 -1.5791 13 1 4.5719 -8.1116 0.6021 14 1 2.1645 -7.8804 0.4242 15 8 3.7800 -2.7189 0.0626 16 7 3.4623 -1.3403 0.0932 17 1 -0.3632 0.0000 1.0276 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3633 -0.8901 -0.5138 20 1 3.2691 1.0696 0.0005 21 1 1.9342 1.8403 -0.8899 22 1 1.9342 1.8403 0.8899 23 1 0.5364 -2.7082 -0.1875 24 1 5.6122 -5.6389 0.0774 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260620918.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = 17.265740 kcal Electronic energy + Delta-G solvation = -10686.164579 eV Core-core repulsion = 8601.153974 eV Total energy + Delta-G solvation = -2085.010605 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.33374 -37.68504 -35.72329 -32.41217 -31.56543 -29.22289 -27.17218 -25.72385 -22.21535 -20.79403 -19.40565 -17.26424 -16.68533 -16.25996 -15.88164 -15.37612 -15.17970 -14.65591 -13.98554 -13.32883 -13.21213 -13.02310 -12.97392 -12.81064 -12.46052 -11.90865 -11.78595 -11.29915 -11.19033 -9.64524 -8.90099 -8.72307 -6.91871 1.05645 1.38404 1.58336 1.65435 2.03080 2.14015 2.25719 3.11556 3.29877 4.23618 4.32687 4.55000 4.68366 4.79561 4.84707 4.90589 4.95162 5.12324 5.28337 5.51982 5.91181 6.23235 6.41996 6.57498 6.73059 7.46482 8.10621 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.094995 B = 0.010615 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.680822 B = 2637.071542 C = 2910.401415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.620 5.620 3 C 0.102 3.898 4 C 0.364 3.636 5 C -0.512 4.512 6 C 0.209 3.791 7 C -0.451 4.451 8 H 0.122 0.878 9 C 0.020 3.980 10 N -0.794 5.794 11 Si 1.018 2.982 12 H -0.253 1.253 13 H -0.262 1.262 14 H -0.244 1.244 15 O -0.120 6.120 16 N -0.516 5.516 17 H 0.050 0.950 18 H 0.098 0.902 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.130 0.870 24 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 1.577 -0.552 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.345 5.345 3 C -0.040 4.040 4 C 0.110 3.890 5 C -0.542 4.542 6 C 0.149 3.851 7 C -0.481 4.481 8 H 0.140 0.860 9 C -0.201 4.201 10 N -0.418 5.418 11 Si 0.834 3.166 12 H -0.178 1.178 13 H -0.186 1.186 14 H -0.167 1.167 15 O -0.120 6.120 16 N -0.293 5.293 17 H 0.069 0.931 18 H 0.116 0.884 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.147 0.853 24 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.133 2.233 -0.416 5.614 hybrid contribution -0.526 -0.786 -0.047 0.947 sum -5.659 1.447 -0.463 5.859 Atomic orbital electron populations 1.21667 0.76699 1.03431 1.01582 1.45665 1.05816 1.00849 1.82202 1.21626 0.96309 0.83984 1.02076 1.19992 0.91170 0.88076 0.89718 1.21529 0.99224 0.89013 1.44389 1.20639 0.84541 0.93825 0.86047 1.19608 0.96982 0.87452 1.44038 0.85999 1.27574 0.93246 1.08979 0.90334 1.69801 1.00677 1.42018 1.29341 0.84680 0.80263 0.71499 0.80111 1.17751 1.18643 1.16710 1.89269 1.27963 1.13790 1.81023 1.80023 1.12308 0.90438 1.46512 0.93149 0.88360 0.92326 0.93167 0.90789 0.91179 0.85256 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.23 10.54 127.77 1.35 4.57 14 2 N -0.62 -25.00 3.40 -753.46 -2.56 -27.56 14 3 C 0.10 3.35 10.76 127.77 1.38 4.73 14 4 C 0.36 19.33 7.58 133.69 1.01 20.34 14 5 C -0.51 -28.20 9.98 23.02 0.23 -27.98 14 6 C 0.21 12.60 6.87 22.91 0.16 12.76 14 7 C -0.45 -24.61 9.35 23.22 0.22 -24.39 14 8 H 0.12 5.96 7.85 -2.91 -0.02 5.94 14 9 C 0.02 0.99 5.50 85.40 0.47 1.46 14 10 N -0.79 -43.32 12.02 21.90 0.26 -43.06 14 11 Si 1.02 35.85 29.56 68.60 2.03 37.88 14 12 H -0.25 -8.46 7.11 99.48 0.71 -7.76 14 13 H -0.26 -8.74 7.11 99.48 0.71 -8.03 14 14 H -0.24 -8.04 7.11 99.48 0.71 -7.34 14 15 O -0.12 -7.84 10.48 26.25 0.27 -7.56 14 16 N -0.52 -30.98 11.98 -55.06 -0.66 -31.64 14 17 H 0.05 1.38 8.14 -2.39 -0.02 1.37 14 18 H 0.10 2.11 8.07 -2.39 -0.02 2.09 14 19 H 0.06 1.85 6.73 -2.38 -0.02 1.83 14 20 H 0.05 1.93 7.19 -2.39 -0.02 1.91 14 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 14 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 14 23 H 0.13 6.42 7.19 -2.91 -0.02 6.40 14 24 H 0.30 14.44 8.29 -92.71 -0.77 13.67 14 Total: -1.00 -71.93 219.08 5.35 -66.57 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.20 Total: 13.89 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.81 Total: -8.51 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.96 Total: -102.27 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.27 Total: -7.56 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -71.93 5.35 -66.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260620918.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.841 kcal (2) G-P(sol) polarization free energy of solvation -71.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds