Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35724 * 116.99587 * 2 1 4 4 C 1.35286 * 125.96686 * 183.28107 * 3 2 1 5 5 C 1.41731 * 107.82628 * 179.91133 * 4 3 2 6 6 C 1.41407 * 126.08630 * 180.14276 * 5 4 3 7 7 H 1.08004 * 119.99832 * 0.27441 * 6 5 4 8 8 C 1.39820 * 120.00404 * 180.28225 * 6 5 4 9 9 N 1.30911 * 119.99647 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00323 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47362 * 89.99849 * 10 8 6 12 12 H 1.48503 * 109.47037 * 209.99749 * 10 8 6 13 13 H 1.48498 * 109.47065 * 329.99313 * 10 8 6 14 14 N 1.32902 * 107.83003 * 0.35764 * 5 4 3 15 15 N 1.36254 * 125.97654 * 3.59654 * 3 2 1 16 16 C 1.46503 * 125.89095 * 359.92093 * 15 3 2 17 17 H 1.08996 * 109.47265 * 307.01790 * 1 2 3 18 18 H 1.09001 * 109.46973 * 67.01367 * 1 2 3 19 19 H 1.09001 * 109.46949 * 187.01312 * 1 2 3 20 20 H 1.07997 * 126.08918 * 359.97438 * 4 3 2 21 21 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 22 22 H 1.09001 * 109.47281 * 82.74426 * 16 15 3 23 23 H 1.08999 * 109.46742 * 202.74189 * 16 15 3 24 24 H 1.08998 * 109.47271 * 322.73828 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.3799 1.4211 -0.0627 5 6 3.5986 2.8213 -0.0395 6 6 4.8546 3.4690 -0.0903 7 1 5.7608 2.8854 -0.1577 8 6 4.9233 4.8650 -0.0533 9 7 3.8248 5.5725 0.0279 10 14 6.5823 5.7207 -0.1212 11 1 6.9438 5.9884 -1.5364 12 1 6.5081 7.0043 0.6220 13 1 7.6141 4.8498 0.4971 14 7 2.4134 3.4170 0.0433 15 7 1.4279 2.4221 0.0692 16 6 -0.0172 2.6466 0.1549 17 1 -0.3633 0.6187 0.8205 18 1 -0.3633 0.4013 -0.9461 19 1 -0.3633 -1.0200 0.1255 20 1 4.1428 0.6590 -0.1211 21 1 3.8724 6.5410 0.0540 22 1 -0.3400 2.5445 1.1910 23 1 -0.2507 3.6500 -0.2011 24 1 -0.5362 1.9126 -0.4615 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646193.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = 51.052146 kcal Electronic energy + Delta-G solvation = -10833.644087 eV Core-core repulsion = 8750.098570 eV Total energy + Delta-G solvation = -2083.545516 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.72371 -37.01361 -33.38295 -31.75519 -28.63656 -26.95336 -26.00639 -24.02632 -20.08193 -19.53874 -17.17339 -15.66582 -15.57140 -14.89327 -14.42448 -13.57786 -13.40322 -13.10344 -12.51850 -12.16331 -11.82409 -11.12675 -10.96433 -10.74676 -10.34541 -10.24823 -9.93245 -9.04544 -8.36593 -7.49578 -6.80640 -6.30198 -4.24685 3.17357 3.26116 3.30522 3.42854 3.76583 4.01931 4.23122 4.43772 5.19651 5.28277 5.49768 5.58784 5.71115 5.83039 6.06049 6.78615 6.83160 7.24101 7.38680 7.46230 7.92246 8.50485 8.77383 9.00303 9.23741 9.93792 10.67075 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.092044 B = 0.011448 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.129498 B = 2445.206817 C = 2728.654333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.311 6.311 3 C 0.232 3.768 4 C -0.316 4.316 5 C 0.224 3.776 6 C -0.443 4.443 7 H 0.082 0.918 8 C 0.071 3.929 9 N -0.776 5.776 10 Si 0.909 3.091 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.264 1.264 14 N -0.315 5.315 15 N -0.448 5.448 16 C 0.102 3.898 17 H 0.056 0.944 18 H 0.051 0.949 19 H 0.090 0.910 20 H 0.125 0.875 21 H 0.270 0.730 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 -4.814 -0.045 7.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.220 6.220 3 C 0.068 3.932 4 C -0.347 4.347 5 C 0.070 3.930 6 C -0.482 4.482 7 H 0.100 0.900 8 C -0.148 4.148 9 N -0.405 5.405 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.189 1.189 14 N -0.147 5.147 15 N -0.242 5.242 16 C -0.041 4.041 17 H 0.075 0.925 18 H 0.070 0.930 19 H 0.109 0.891 20 H 0.143 0.857 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.097 0.903 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.207 -3.846 0.043 7.302 hybrid contribution 0.728 -0.293 -0.051 0.786 sum -5.479 -4.139 -0.007 6.866 Atomic orbital electron populations 1.23345 0.80315 1.03126 1.00786 1.86119 1.19862 1.24856 1.91115 1.19739 0.91523 0.78360 1.03615 1.20464 0.90439 0.97508 1.26253 1.19197 0.93231 0.88151 0.92371 1.18615 0.90763 0.90827 1.48022 0.90005 1.25818 0.97541 0.97834 0.93621 1.69963 1.27948 1.06615 1.35939 0.86310 0.82754 0.78782 0.78691 1.19861 1.20652 1.18857 1.79053 0.94274 1.03459 1.37871 1.49403 1.06094 1.03452 1.65227 1.21816 0.78719 1.03180 1.00354 0.92532 0.93031 0.89144 0.85672 0.91954 0.93361 0.90252 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.39 101.05 0.95 1.23 14 2 O -0.31 -6.35 10.57 -18.88 -0.20 -6.55 14 3 C 0.23 5.66 7.76 -16.64 -0.13 5.53 14 4 C -0.32 -8.41 10.78 -39.30 -0.42 -8.84 14 5 C 0.22 6.64 6.76 -84.86 -0.57 6.06 14 6 C -0.44 -12.79 9.40 -37.78 -0.35 -13.15 14 7 H 0.08 2.21 7.84 -52.48 -0.41 1.80 14 8 C 0.07 1.96 5.49 -17.35 -0.10 1.86 14 9 N -0.78 -22.49 11.94 55.54 0.66 -21.83 14 10 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 14 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 13 H -0.26 -5.72 7.11 56.52 0.40 -5.31 14 14 N -0.31 -9.31 10.82 32.25 0.35 -8.96 14 15 N -0.45 -11.09 4.05 -68.17 -0.28 -11.37 14 16 C 0.10 1.86 9.58 59.85 0.57 2.43 14 17 H 0.06 0.77 5.79 -51.93 -0.30 0.47 14 18 H 0.05 0.69 6.61 -51.93 -0.34 0.34 14 19 H 0.09 0.99 8.14 -51.93 -0.42 0.56 14 20 H 0.13 3.06 8.06 -52.49 -0.42 2.64 14 21 H 0.27 7.14 8.30 -40.82 -0.34 6.80 14 22 H 0.05 0.78 7.63 -51.93 -0.40 0.39 14 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 14 24 H 0.07 1.00 4.64 -51.93 -0.24 0.76 14 LS Contribution 212.56 15.07 3.20 3.20 Total: -1.00 -33.60 212.56 -3.43 -37.03 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.09 Total: -1.79 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.05 Total: -4.87 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.74 Total: -42.16 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.20 Total: -6.55 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -33.60 -3.43 -37.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646193.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.081 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds