Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35724 * 116.99587 * 2 1 4 4 C 1.35286 * 125.96686 * 183.28107 * 3 2 1 5 5 C 1.41731 * 107.82628 * 179.91133 * 4 3 2 6 6 C 1.41407 * 126.08630 * 180.14276 * 5 4 3 7 7 H 1.08004 * 119.99832 * 0.27441 * 6 5 4 8 8 C 1.39820 * 120.00404 * 180.28225 * 6 5 4 9 9 N 1.30911 * 119.99647 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00323 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47362 * 89.99849 * 10 8 6 12 12 H 1.48503 * 109.47037 * 209.99749 * 10 8 6 13 13 H 1.48498 * 109.47065 * 329.99313 * 10 8 6 14 14 N 1.32902 * 107.83003 * 0.35764 * 5 4 3 15 15 N 1.36254 * 125.97654 * 3.59654 * 3 2 1 16 16 C 1.46503 * 125.89095 * 359.92093 * 15 3 2 17 17 H 1.08996 * 109.47265 * 307.01790 * 1 2 3 18 18 H 1.09001 * 109.46973 * 67.01367 * 1 2 3 19 19 H 1.09001 * 109.46949 * 187.01312 * 1 2 3 20 20 H 1.07997 * 126.08918 * 359.97438 * 4 3 2 21 21 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 22 22 H 1.09001 * 109.47281 * 82.74426 * 16 15 3 23 23 H 1.08999 * 109.46742 * 202.74189 * 16 15 3 24 24 H 1.08998 * 109.47271 * 322.73828 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.3799 1.4211 -0.0627 5 6 3.5986 2.8213 -0.0395 6 6 4.8546 3.4690 -0.0903 7 1 5.7608 2.8854 -0.1577 8 6 4.9233 4.8650 -0.0533 9 7 3.8248 5.5725 0.0279 10 14 6.5823 5.7207 -0.1212 11 1 6.9438 5.9884 -1.5364 12 1 6.5081 7.0043 0.6220 13 1 7.6141 4.8498 0.4971 14 7 2.4134 3.4170 0.0433 15 7 1.4279 2.4221 0.0692 16 6 -0.0172 2.6466 0.1549 17 1 -0.3633 0.6187 0.8205 18 1 -0.3633 0.4013 -0.9461 19 1 -0.3633 -1.0200 0.1255 20 1 4.1428 0.6590 -0.1211 21 1 3.8724 6.5410 0.0540 22 1 -0.3400 2.5445 1.1910 23 1 -0.2507 3.6500 -0.2011 24 1 -0.5362 1.9126 -0.4615 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646193.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = 25.617688 kcal Electronic energy + Delta-G solvation = -10834.747008 eV Core-core repulsion = 8750.098570 eV Total energy + Delta-G solvation = -2084.648437 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.55863 -38.73647 -35.38880 -33.55665 -30.40627 -28.91426 -27.57057 -25.82373 -21.92045 -21.52568 -19.02408 -17.54205 -17.19067 -16.66821 -15.99290 -15.48789 -14.94980 -14.67052 -14.27956 -13.74577 -13.53325 -12.88360 -12.83061 -12.60109 -11.97371 -11.83251 -11.79692 -10.97065 -10.42433 -9.47814 -8.77665 -8.34871 -6.39962 1.40146 1.45882 1.55045 1.61444 2.04393 2.32626 2.37951 2.52382 3.58965 3.86297 4.18971 4.30453 4.41005 4.48537 4.70721 4.89250 5.08835 5.30479 5.41107 5.48136 5.93105 6.41057 6.90192 6.97873 7.14816 7.86589 8.64450 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.092044 B = 0.011448 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.129498 B = 2445.206817 C = 2728.654333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.317 6.317 3 C 0.254 3.746 4 C -0.360 4.360 5 C 0.193 3.807 6 C -0.479 4.479 7 H 0.087 0.913 8 C 0.022 3.978 9 N -0.816 5.816 10 Si 0.994 3.006 11 H -0.264 1.264 12 H -0.272 1.272 13 H -0.255 1.255 14 N -0.358 5.358 15 N -0.451 5.451 16 C 0.089 3.911 17 H 0.067 0.933 18 H 0.066 0.934 19 H 0.132 0.868 20 H 0.133 0.867 21 H 0.276 0.724 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.966 -5.282 -0.048 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.224 6.224 3 C 0.087 3.913 4 C -0.390 4.390 5 C 0.040 3.960 6 C -0.518 4.518 7 H 0.105 0.895 8 C -0.193 4.193 9 N -0.445 5.445 10 Si 0.815 3.185 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.179 1.179 14 N -0.191 5.191 15 N -0.245 5.245 16 C -0.051 4.051 17 H 0.085 0.915 18 H 0.084 0.916 19 H 0.150 0.850 20 H 0.150 0.850 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.838 -4.339 0.042 8.098 hybrid contribution 0.679 -0.277 -0.042 0.734 sum -6.159 -4.616 0.000 7.697 Atomic orbital electron populations 1.23836 0.76784 1.06381 1.01995 1.86147 1.23420 1.22291 1.90582 1.19635 0.91256 0.79622 1.00767 1.20599 0.92266 0.96825 1.29350 1.19638 0.93758 0.89767 0.92878 1.19050 0.91139 0.92184 1.49471 0.89489 1.26852 1.02147 0.98041 0.92306 1.70086 1.30706 1.07186 1.36509 0.85035 0.76948 0.77435 0.79112 1.18896 1.19685 1.17888 1.78870 0.95287 1.05878 1.39036 1.49671 1.07778 1.02894 1.64188 1.22311 0.75561 1.04461 1.02795 0.91455 0.91599 0.84984 0.84955 0.91395 0.91038 0.90623 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 9.39 113.37 1.07 1.16 14 2 O -0.32 -12.18 10.57 -90.47 -0.96 -13.14 14 3 C 0.25 12.24 7.76 83.33 0.65 12.89 14 4 C -0.36 -19.61 10.78 22.45 0.24 -19.37 14 5 C 0.19 11.78 6.76 40.62 0.27 12.06 14 6 C -0.48 -28.52 9.40 23.43 0.22 -28.30 14 7 H 0.09 4.84 7.84 -2.91 -0.02 4.82 14 8 C 0.02 1.22 5.49 85.21 0.47 1.69 14 9 N -0.82 -48.22 11.94 21.81 0.26 -47.96 14 10 Si 0.99 41.64 29.56 68.60 2.03 43.67 14 11 H -0.26 -10.60 7.11 99.48 0.71 -9.90 14 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14 13 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 14 N -0.36 -21.62 10.82 -51.87 -0.56 -22.18 14 15 N -0.45 -22.06 4.05 -480.31 -1.94 -24.00 14 16 C 0.09 3.04 9.58 127.77 1.22 4.27 14 17 H 0.07 1.55 5.79 -2.39 -0.01 1.53 14 18 H 0.07 1.46 6.61 -2.39 -0.02 1.45 14 19 H 0.13 2.21 8.14 -2.39 -0.02 2.19 14 20 H 0.13 6.69 8.06 -2.91 -0.02 6.66 14 21 H 0.28 14.81 8.30 -92.71 -0.77 14.04 14 22 H 0.07 2.12 7.63 -2.39 -0.02 2.10 14 23 H 0.07 2.64 8.14 -2.39 -0.02 2.62 14 24 H 0.11 2.80 4.64 -2.39 -0.01 2.78 14 Total: -1.00 -74.76 212.56 4.18 -70.58 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.21 Total: 8.63 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 4.14 Total: -15.61 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -2.24 Total: -94.14 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.96 Total: -13.14 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -74.76 4.18 -70.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646193.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.200 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds