Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35880 * 126.07568 * 2 1 4 4 C 1.35590 * 107.57347 * 180.15367 * 3 2 1 5 5 O 1.36232 * 126.04636 * 179.89886 * 4 3 2 6 6 C 1.42905 * 116.99740 * 179.71366 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99835 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47092 * 90.00048 * 11 9 7 13 13 H 1.48498 * 109.47340 * 210.00299 * 11 9 7 14 14 H 1.48501 * 109.47391 * 330.00372 * 11 9 7 15 15 C 1.40111 * 107.90003 * 359.63676 * 4 3 2 16 16 N 1.30869 * 108.35731 * 0.22458 * 15 4 3 17 17 H 1.08993 * 109.47219 * 270.26667 * 1 2 3 18 18 H 1.09002 * 109.46949 * 30.27086 * 1 2 3 19 19 H 1.09002 * 109.47005 * 150.26895 * 1 2 3 20 20 H 1.07996 * 126.21365 * 0.05343 * 3 2 1 21 21 H 1.09000 * 109.47187 * 300.00125 * 6 5 4 22 22 H 1.09001 * 109.46558 * 60.00172 * 6 5 4 23 23 H 0.96992 * 120.00038 * 180.02562 * 10 9 7 24 24 H 1.08000 * 125.82019 * 180.26368 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2652 1.0982 0.0000 4 6 3.5510 0.6680 -0.0035 5 8 4.6607 1.4581 -0.0066 6 6 5.9277 0.7971 -0.0036 7 6 7.0302 1.8245 -0.0071 8 1 6.7877 2.8769 -0.0115 9 6 8.3486 1.4210 -0.0056 10 7 8.6440 0.1394 -0.0016 11 14 9.7152 2.6944 -0.0106 12 1 10.0775 3.0372 1.3882 13 1 10.9039 2.1421 -0.7086 14 1 9.2508 3.9163 -0.7152 15 6 3.5363 -0.7331 0.0028 16 7 2.2899 -1.1322 0.0049 17 1 -0.3633 0.0048 1.0276 18 1 -0.3633 0.8876 -0.5180 19 1 -0.3633 -0.8924 -0.5097 20 1 1.9366 2.1270 0.0008 21 1 6.0120 0.1772 0.8890 22 1 6.0123 0.1699 -0.8910 23 1 9.5715 -0.1445 -0.0002 24 1 4.4053 -1.3743 0.0060 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260724236.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 15.207878 kcal Electronic energy + Delta-G solvation = -10388.923659 eV Core-core repulsion = 8303.823818 eV Total energy + Delta-G solvation = -2085.099841 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.11323 -38.72574 -35.01117 -33.79122 -31.02949 -29.23050 -27.18277 -25.01799 -22.04262 -21.64637 -18.93053 -18.45415 -16.78323 -16.77764 -16.23657 -15.60557 -15.40512 -15.17363 -14.14487 -13.53042 -13.41765 -13.20297 -12.91364 -12.83430 -12.19733 -11.97096 -11.72276 -11.30091 -10.67998 -10.34510 -8.73695 -8.34861 -6.48653 0.80452 1.41903 1.45321 1.56670 1.62929 1.80661 2.33327 2.87506 2.99691 3.88928 3.99322 4.31237 4.51908 4.59972 4.73784 4.74770 4.92355 5.07631 5.31952 5.55062 5.88580 6.10782 6.56516 6.58608 6.91355 7.24022 8.77650 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.122690 B = 0.008218 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 228.161898 B = 3406.182591 C = 3613.897657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 C 0.020 3.980 4 C -0.057 4.057 5 O -0.328 6.328 6 C 0.217 3.783 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.990 3.010 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.262 1.262 15 C -0.021 4.021 16 N -0.299 5.299 17 H 0.090 0.910 18 H 0.119 0.881 19 H 0.095 0.905 20 H 0.215 0.785 21 H -0.005 1.005 22 H -0.005 1.005 23 H 0.273 0.727 24 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 1.962 -0.071 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.157 5.157 3 C -0.125 4.125 4 C -0.111 4.111 5 O -0.241 6.241 6 C 0.143 3.857 7 C -0.592 4.592 8 H 0.086 0.914 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.812 3.188 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.187 1.187 15 C -0.206 4.206 16 N -0.125 5.125 17 H 0.108 0.892 18 H 0.137 0.863 19 H 0.114 0.886 20 H 0.231 0.769 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.082 0.918 24 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.786 1.065 -0.075 13.827 hybrid contribution 1.552 0.528 0.028 1.639 sum -12.234 1.593 -0.047 12.337 Atomic orbital electron populations 1.22266 0.70460 1.06323 1.04934 1.48690 1.07872 1.02110 1.57021 1.21970 0.87696 0.94899 1.07939 1.19452 0.89279 0.90191 1.12203 1.85966 1.13157 1.34487 1.90487 1.20048 0.77874 0.93335 0.94415 1.21337 0.90731 0.93892 1.53196 0.91430 1.26003 1.01183 0.98332 0.93609 1.70071 1.20377 1.16371 1.49825 0.85083 0.76779 0.78029 0.78906 1.19190 1.19875 1.18654 1.24070 0.96146 0.94872 1.05466 1.77087 1.00892 1.10045 1.24450 0.89205 0.86283 0.88643 0.76876 0.98710 0.98683 0.91833 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 11.48 127.77 1.47 3.02 14 2 N -0.37 -10.92 4.04 -368.56 -1.49 -12.40 14 3 C 0.02 0.65 11.56 83.45 0.96 1.61 14 4 C -0.06 -2.47 6.96 22.11 0.15 -2.32 14 5 O -0.33 -17.02 10.21 -96.20 -0.98 -18.00 14 6 C 0.22 12.49 4.84 71.24 0.34 12.83 14 7 C -0.55 -33.11 9.43 25.60 0.24 -32.87 14 8 H 0.07 3.95 7.81 -2.91 -0.02 3.93 14 9 C 0.01 0.45 5.46 84.65 0.46 0.91 14 10 N -0.93 -55.65 13.29 21.45 0.28 -55.37 14 11 Si 0.99 44.00 29.54 68.60 2.03 46.02 14 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 14 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 14 15 C -0.02 -0.90 11.07 85.29 0.94 0.05 14 16 N -0.30 -11.21 12.57 -56.85 -0.71 -11.93 14 17 H 0.09 1.12 8.14 -2.39 -0.02 1.10 14 18 H 0.12 1.10 8.14 -2.39 -0.02 1.08 14 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 14 20 H 0.21 5.15 8.06 -2.91 -0.02 5.12 14 21 H 0.00 -0.29 8.10 -2.39 -0.02 -0.31 14 22 H 0.00 -0.28 8.10 -2.39 -0.02 -0.30 14 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 14 24 H 0.18 7.45 7.69 -2.91 -0.02 7.43 14 Total: -1.00 -71.70 224.26 4.89 -66.81 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.18 Total: 1.64 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.58 Total: -16.77 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.92 Total: -79.70 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.98 Total: -18.00 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.70 4.89 -66.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260724236.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.016 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds