Wall clock time and date at job start Mon Mar 30 2020 01:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47181 * 240.00002 * 2 1 3 5 5 H 1.08009 * 120.00108 * 239.99491 * 4 2 1 6 6 C 1.37878 * 120.00232 * 59.99830 * 4 2 1 7 7 N 1.31510 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00124 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47045 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46837 * 120.00144 * 8 6 4 11 11 H 1.48504 * 109.46944 * 239.99849 * 8 6 4 12 12 C 1.50700 * 109.47095 * 119.99853 * 2 1 3 13 13 C 1.32865 * 126.04095 * 239.99628 * 12 2 1 14 14 N 1.38703 * 107.91290 * 179.70311 * 13 12 2 15 15 H 0.97003 * 125.97951 * 180.26621 * 14 13 12 16 16 C 1.34755 * 108.03122 * 0.26827 * 14 13 12 17 17 O 1.21800 * 125.94584 * 179.97438 * 16 14 13 18 18 N 1.34756 * 108.10719 * 359.97438 * 16 14 13 19 19 H 0.96998 * 125.98494 * 179.97438 * 18 16 14 20 20 H 1.09000 * 109.47263 * 299.99460 * 1 2 3 21 21 H 1.08999 * 109.47134 * 60.00431 * 1 2 3 22 22 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99994 * 180.02562 * 7 6 4 24 24 H 1.08002 * 126.04638 * 359.97438 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1485 -2.2856 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1472 -0.1857 -4.8161 12 6 2.0323 -0.7104 1.2305 13 6 2.7994 -0.1836 2.1789 14 7 3.0297 -1.1626 3.1340 15 1 3.5555 -1.0576 3.9424 16 6 2.3952 -2.2850 2.7423 17 8 2.3823 -3.3453 3.3416 18 7 1.7775 -2.0303 1.5720 19 1 1.2454 -2.6589 1.0598 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.1735 0.8292 2.2040 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908248.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:43 Heat of formation + Delta-G solvation = -26.280885 kcal Electronic energy + Delta-G solvation = -10797.863151 eV Core-core repulsion = 8710.964222 eV Total energy + Delta-G solvation = -2086.898928 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.00938 -38.04048 -36.16706 -34.21013 -32.52906 -28.86567 -27.16875 -23.60710 -23.28789 -21.41838 -19.03570 -18.04689 -17.10841 -16.84343 -16.58119 -15.81657 -15.02308 -14.59979 -14.41948 -13.46214 -13.10460 -12.84309 -12.48967 -12.22095 -12.09543 -11.85768 -11.47952 -11.37043 -10.94298 -10.46066 -8.54710 -8.07245 -6.21737 1.42805 1.46859 1.54620 1.61960 1.90819 1.96833 2.46655 2.95527 3.20887 4.37935 4.69712 4.84447 4.93306 5.01406 5.18895 5.26955 5.61415 5.81861 5.84888 6.07549 6.23760 6.42652 6.59305 6.85520 7.45325 7.49359 8.95123 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.059254 B = 0.012009 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.431676 B = 2331.014644 C = 2530.435294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.103 3.897 3 H 0.044 0.956 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.053 3.947 13 C -0.036 4.036 14 N -0.620 5.620 15 H 0.441 0.559 16 C 0.632 3.368 17 O -0.636 6.636 18 N -0.624 5.624 19 H 0.430 0.570 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.024 0.976 23 H 0.263 0.737 24 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 1.113 5.435 6.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.062 0.938 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.775 3.225 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.207 1.207 12 C -0.054 4.054 13 C -0.158 4.158 14 N -0.263 5.263 15 H 0.284 0.716 16 C 0.331 3.669 17 O -0.521 6.521 18 N -0.264 5.264 19 H 0.270 0.730 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.216 0.599 5.675 6.121 hybrid contribution 0.168 -0.648 -0.939 1.153 sum 2.384 -0.049 4.735 5.302 Atomic orbital electron populations 1.21645 0.97292 0.99128 1.00421 1.17358 0.93023 0.94607 0.86668 0.93824 1.21320 1.31333 1.12566 0.91218 0.93402 1.25536 0.95162 0.95574 1.01319 1.69964 1.37149 1.23622 1.24081 0.85658 0.78066 0.78664 0.80114 1.19953 1.20884 1.20653 1.21005 1.01625 0.83792 0.98940 1.21916 1.06404 0.97042 0.90483 1.42955 1.48633 1.10384 1.24361 0.71624 1.16412 0.83074 0.84613 0.82784 1.90986 1.71614 1.27129 1.62354 1.43235 1.48262 1.13440 1.21479 0.73029 0.94873 0.91714 0.95639 0.92781 0.77214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.95 71.98 0.64 -4.85 14 2 C 0.10 4.55 2.70 -12.29 -0.03 4.52 14 3 H 0.04 2.01 8.10 -2.39 -0.02 1.99 14 4 C -0.53 -26.33 8.55 25.60 0.22 -26.12 14 5 H 0.05 2.44 7.74 -2.91 -0.02 2.42 14 6 C 0.02 1.22 5.30 84.66 0.45 1.67 14 7 N -0.91 -48.05 11.32 21.45 0.24 -47.80 14 8 Si 0.95 41.33 29.54 68.60 2.03 43.35 14 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 14 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 12 C 0.05 1.99 5.62 40.30 0.23 2.21 14 13 C -0.04 -1.11 11.82 82.43 0.97 -0.13 14 14 N -0.62 -18.41 6.15 -323.81 -1.99 -20.40 14 15 H 0.44 9.82 8.96 -92.71 -0.83 8.99 14 16 C 0.63 24.15 9.32 179.07 1.67 25.82 14 17 O -0.64 -28.40 18.06 -4.67 -0.08 -28.48 14 18 N -0.62 -23.67 6.15 -311.97 -1.92 -25.59 14 19 H 0.43 15.86 8.96 -92.71 -0.83 15.03 14 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 14 21 H 0.06 3.14 6.07 -2.39 -0.01 3.13 14 22 H 0.02 1.05 8.14 -2.39 -0.02 1.04 14 23 H 0.26 13.30 8.31 -92.71 -0.77 12.53 14 24 H 0.21 4.81 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -60.74 217.31 1.99 -58.75 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.43 Total: 17.06 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.15 Total: 3.12 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.67 Total: -93.80 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.08 Total: -28.48 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -60.74 1.99 -58.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908248.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.467 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds