Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47070 * 2 1 4 4 N 1.39848 * 125.69059 * 90.01934 * 3 2 1 5 5 C 1.30276 * 109.46639 * 179.97438 * 4 3 2 6 6 C 1.41846 * 108.18506 * 359.97438 * 5 4 3 7 7 C 1.41291 * 126.61798 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99961 * 187.02883 * 7 6 5 9 9 C 1.39597 * 119.99866 * 7.03337 * 7 6 5 10 10 N 1.31149 * 120.00191 * 10.66412 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 190.66421 * 9 7 6 12 12 H 1.48500 * 109.47043 * 93.94029 * 11 9 7 13 13 H 1.48495 * 109.47277 * 213.94489 * 11 9 7 14 14 H 1.48502 * 109.46935 * 333.94758 * 11 9 7 15 15 C 1.34927 * 125.68099 * 269.99232 * 3 2 1 16 16 O 1.35282 * 126.52227 * 0.02562 * 15 3 2 17 17 H 1.08998 * 109.46848 * 60.01171 * 1 2 3 18 18 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 19 19 H 1.08989 * 109.47364 * 300.00548 * 1 2 3 20 20 H 1.08996 * 109.47732 * 239.99339 * 2 1 3 21 21 H 1.09006 * 109.47018 * 119.99452 * 2 1 3 22 22 H 1.07997 * 125.90703 * 179.97438 * 5 4 3 23 23 H 0.97000 * 120.00686 * 179.97438 * 10 9 7 24 24 H 0.96692 * 114.00073 * 269.97144 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2906 2.1503 1.1358 5 6 2.7080 3.3295 0.7718 6 6 2.7246 3.3751 -0.6458 7 6 3.1130 4.4705 -1.4493 8 1 2.9775 4.4297 -2.5200 9 6 3.6720 5.6054 -0.8592 10 7 4.0300 5.5798 0.4023 11 14 3.9100 7.1606 -1.8661 12 1 2.7360 8.0518 -1.6855 13 1 5.1380 7.8613 -1.4120 14 1 4.0451 6.8050 -3.3016 15 6 2.2808 2.1231 -1.0960 16 8 2.1426 1.7334 -2.3841 17 1 -0.3633 0.5136 -0.8901 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8898 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 2.9921 4.1333 1.4348 23 1 4.4188 6.3682 0.8123 24 1 2.9353 1.3258 -2.7588 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260974153.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = 23.911192 kcal Electronic energy + Delta-G solvation = -10822.618434 eV Core-core repulsion = 8737.895997 eV Total energy + Delta-G solvation = -2084.722437 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.39018 -35.72090 -34.05082 -32.69291 -28.64972 -28.15768 -24.69686 -22.59160 -19.80590 -19.41882 -17.47915 -16.35956 -14.85706 -14.69546 -14.13279 -13.64956 -12.86694 -12.69627 -12.30912 -11.75685 -11.46643 -11.13353 -11.09858 -10.79937 -10.65382 -10.48849 -9.73171 -9.19858 -8.70992 -7.72712 -7.16991 -6.51870 -3.98414 2.95524 3.19552 3.24373 3.29507 3.78995 4.11957 4.29704 5.27762 5.40870 5.60547 5.67093 5.73606 6.01893 6.16551 6.54793 6.76026 7.20754 7.43551 7.53983 7.90382 8.10237 8.60016 8.79047 9.09933 9.21220 9.42878 10.49095 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.073248 B = 0.012366 C = 0.011061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.170944 B = 2263.640779 C = 2530.883027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 N -0.400 5.400 4 N -0.318 5.318 5 C 0.036 3.964 6 C -0.013 4.013 7 C -0.429 4.429 8 H 0.073 0.927 9 C 0.067 3.933 10 N -0.833 5.833 11 Si 0.916 3.084 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.266 1.266 15 C 0.057 3.943 16 O -0.459 6.459 17 H 0.058 0.942 18 H 0.059 0.941 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.197 0.803 23 H 0.275 0.725 24 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -4.785 -1.537 5.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 N -0.199 5.199 4 N -0.143 5.143 5 C -0.151 4.151 6 C -0.024 4.024 7 C -0.463 4.463 8 H 0.091 0.909 9 C -0.145 4.145 10 N -0.464 5.464 11 Si 0.742 3.258 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.190 1.190 15 C -0.104 4.104 16 O -0.258 6.258 17 H 0.077 0.923 18 H 0.078 0.922 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.214 0.786 23 H 0.086 0.914 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.386 -5.257 -0.503 5.795 hybrid contribution 0.803 0.931 -1.298 1.788 sum -1.583 -4.325 -1.802 4.946 Atomic orbital electron populations 1.22161 0.96137 1.01160 1.02851 1.21057 0.94108 0.80844 1.01781 1.47960 1.57230 1.10895 1.03826 1.76571 1.23633 1.06430 1.07684 1.24540 1.00068 0.94146 0.96330 1.17969 0.99976 0.91866 0.92593 1.18691 1.35461 0.97654 0.94452 0.90911 1.25702 0.93543 1.00042 0.95183 1.69659 1.34415 1.29947 1.12411 0.86181 0.78047 0.81139 0.80473 1.19831 1.20614 1.19049 1.18773 1.20471 0.92085 0.79117 1.84831 1.39002 1.80743 1.21260 0.92257 0.92190 0.92267 0.91156 0.90701 0.78632 0.91416 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 14 2 C 0.15 2.63 7.08 -4.04 -0.03 2.60 14 3 N -0.40 -9.53 3.59 -60.47 -0.22 -9.75 14 4 N -0.32 -8.22 12.45 30.95 0.39 -7.83 14 5 C 0.04 0.98 10.87 -16.83 -0.18 0.80 14 6 C -0.01 -0.38 5.92 -106.60 -0.63 -1.01 14 7 C -0.43 -11.97 9.36 -37.92 -0.35 -12.33 14 8 H 0.07 2.00 7.86 -52.49 -0.41 1.59 14 9 C 0.07 1.75 5.45 -17.34 -0.09 1.66 14 10 N -0.83 -22.00 10.57 55.53 0.59 -21.41 14 11 Si 0.92 19.73 29.57 -169.99 -5.03 14.70 14 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 15 C 0.06 1.48 8.06 -15.43 -0.12 1.35 14 16 O -0.46 -10.42 13.52 -17.54 -0.24 -10.66 14 17 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 18 H 0.06 0.75 8.14 -51.93 -0.42 0.32 14 19 H 0.06 1.01 8.14 -51.94 -0.42 0.59 14 20 H 0.07 1.13 8.12 -51.93 -0.42 0.71 14 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 14 22 H 0.20 5.35 6.03 -52.49 -0.32 5.04 14 23 H 0.28 6.65 8.30 -40.82 -0.34 6.31 14 24 H 0.35 6.33 9.06 45.56 0.41 6.74 14 LS Contribution 219.94 15.07 3.31 3.31 Total: -1.00 -30.52 219.94 -3.79 -34.31 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -1.56 Total: 6.52 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.04 Total: -9.20 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.75 Total: -38.99 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.24 Total: -10.66 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.52 -3.79 -34.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260974153.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.221 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds