Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46843 * 2 1 4 4 N 1.29974 * 127.24938 * 270.13939 * 3 2 1 5 5 O 1.20526 * 113.30171 * 180.31412 * 4 3 2 6 6 C 1.34129 * 113.22362 * 359.71667 * 5 4 3 7 7 N 1.36958 * 127.21848 * 179.97438 * 6 5 4 8 8 C 1.41179 * 105.57169 * 0.02562 * 6 5 4 9 9 C 1.41107 * 128.80630 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00555 * 148.73952 * 9 8 6 11 11 C 1.39573 * 119.99811 * 328.73683 * 9 8 6 12 12 N 1.31202 * 119.99796 * 341.38836 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 161.65774 * 11 9 8 14 14 H 1.48506 * 109.47185 * 179.72810 * 13 11 9 15 15 H 1.48495 * 109.47203 * 299.72378 * 13 11 9 16 16 H 1.48504 * 109.47159 * 59.72905 * 13 11 9 17 17 H 1.09001 * 109.47376 * 59.99467 * 1 2 3 18 18 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 19 19 H 1.09005 * 109.46848 * 299.99322 * 1 2 3 20 20 H 1.09005 * 109.46848 * 240.00678 * 2 1 3 21 21 H 1.09001 * 109.47376 * 120.00533 * 2 1 3 22 22 H 0.96990 * 120.00334 * 172.12874 * 7 6 5 23 23 H 0.97004 * 119.99764 * 352.12908 * 7 6 5 24 24 H 0.97002 * 119.99386 * 176.68965 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2921 2.1634 -1.0346 5 8 2.6883 3.2640 -0.7441 6 6 2.7627 3.4670 0.5796 7 7 3.1733 4.6051 1.2214 8 6 2.3301 2.2612 1.1729 9 6 2.2168 1.9402 2.5423 10 1 1.4540 1.2515 2.8743 11 6 3.0907 2.5128 3.4679 12 7 4.2203 3.0430 3.0626 13 14 2.6554 2.5175 5.2844 14 1 3.7436 3.1740 6.0525 15 1 1.3871 3.2626 5.4876 16 1 2.4895 1.1195 5.7573 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8933 -0.5138 -0.8901 21 1 1.8933 -0.5139 0.8899 22 1 3.0790 4.6801 2.1838 23 1 3.5585 5.3362 0.7133 24 1 4.8051 3.4834 3.6989 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020329.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = 42.543837 kcal Electronic energy + Delta-G solvation = -11006.639734 eV Core-core repulsion = 8922.725270 eV Total energy + Delta-G solvation = -2083.914464 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.58202 -34.66873 -33.93728 -32.21205 -29.94051 -28.33227 -25.37439 -23.21292 -20.81616 -18.98025 -16.98692 -15.96954 -15.78283 -15.20718 -14.79218 -13.85932 -13.33003 -12.75071 -12.25185 -11.73401 -11.43433 -11.14597 -10.73160 -10.56240 -10.49247 -10.04461 -9.79736 -9.37234 -8.87521 -8.17599 -6.59495 -6.20563 -3.98522 3.09440 3.18681 3.22732 3.41335 4.00469 4.14655 4.40798 5.22875 5.52850 5.74099 6.07060 6.09944 6.23997 6.42358 6.56921 6.86054 7.05617 7.16164 7.48499 7.57163 8.47028 8.75691 8.98429 9.06557 9.13656 10.24308 10.55999 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.017782 C = 0.013227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.333302 B = 1574.269185 C = 2116.374143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.019 4.019 4 N -0.416 5.416 5 O 0.037 5.963 6 C 0.137 3.863 7 N -0.802 5.802 8 C -0.068 4.068 9 C -0.427 4.427 10 H 0.071 0.929 11 C 0.058 3.942 12 N -0.828 5.828 13 Si 0.897 3.103 14 H -0.284 1.284 15 H -0.271 1.271 16 H -0.270 1.270 17 H 0.047 0.953 18 H 0.049 0.951 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.077 0.923 22 H 0.416 0.584 23 H 0.375 0.625 24 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 0.048 0.216 2.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.176 4.176 4 N -0.135 5.135 5 O -0.017 6.017 6 C -0.028 4.028 7 N -0.358 5.358 8 C -0.080 4.080 9 C -0.462 4.462 10 H 0.089 0.911 11 C -0.151 4.151 12 N -0.461 5.461 13 Si 0.724 3.276 14 H -0.209 1.209 15 H -0.196 1.196 16 H -0.195 1.195 17 H 0.067 0.933 18 H 0.068 0.932 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.252 0.748 23 H 0.200 0.800 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.752 -0.173 -1.051 2.951 hybrid contribution 0.207 0.389 1.961 2.010 sum -2.545 0.216 0.910 2.712 Atomic orbital electron populations 1.21679 0.95728 1.00421 1.01970 1.19528 0.94875 0.90139 1.01719 1.24166 1.05954 0.97177 0.90300 1.72979 1.23053 0.93376 1.24113 1.84166 1.67014 1.27383 1.23172 1.20823 1.08669 0.91253 0.82062 1.40409 1.71798 1.14171 1.09388 1.18767 1.07882 0.88302 0.93021 1.18138 1.13602 1.25396 0.89024 0.91072 1.25585 0.93665 0.95911 0.99980 1.70045 1.07570 1.32234 1.36239 0.86539 0.78544 0.79155 0.83409 1.20919 1.19598 1.19544 0.93339 0.93233 0.92293 0.92305 0.90478 0.74796 0.79953 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 37.16 0.37 -2.10 14 2 C -0.02 -0.50 6.52 -27.89 -0.18 -0.68 14 3 C -0.02 -0.49 6.84 -79.68 -0.55 -1.04 14 4 N -0.42 -10.74 11.94 35.02 0.42 -10.32 14 5 O 0.04 0.96 11.08 17.05 0.19 1.15 14 6 C 0.14 3.54 8.30 -14.15 -0.12 3.43 14 7 N -0.80 -17.92 8.08 31.45 0.25 -17.67 14 8 C -0.07 -1.83 5.94 -104.00 -0.62 -2.45 14 9 C -0.43 -11.49 9.38 -38.00 -0.36 -11.84 14 10 H 0.07 1.85 7.90 -52.49 -0.41 1.44 14 11 C 0.06 1.48 4.61 -17.32 -0.08 1.40 14 12 N -0.83 -21.52 10.59 55.53 0.59 -20.93 14 13 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 14 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 14 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 17 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 14 19 H 0.06 1.09 8.14 -51.93 -0.42 0.66 14 20 H 0.06 1.12 8.14 -51.93 -0.42 0.69 14 21 H 0.08 1.56 8.14 -51.93 -0.42 1.14 14 22 H 0.42 9.39 6.57 -40.82 -0.27 9.12 14 23 H 0.37 7.07 8.95 -40.82 -0.37 6.70 14 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 14 LS Contribution 216.53 15.07 3.26 3.26 Total: -1.00 -29.14 216.53 -4.15 -33.29 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -2.30 Total: 10.42 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.53 Total: -13.29 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 1.26 Total: -48.93 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.19 Total: 1.15 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.14 -4.15 -33.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020329.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.833 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds