Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46843 * 2 1 4 4 N 1.29974 * 127.24938 * 270.13939 * 3 2 1 5 5 O 1.20526 * 113.30171 * 180.31412 * 4 3 2 6 6 C 1.34129 * 113.22362 * 359.71667 * 5 4 3 7 7 N 1.36958 * 127.21848 * 179.97438 * 6 5 4 8 8 C 1.41179 * 105.57169 * 0.02562 * 6 5 4 9 9 C 1.41107 * 128.80630 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00555 * 148.73952 * 9 8 6 11 11 C 1.39573 * 119.99811 * 328.73683 * 9 8 6 12 12 N 1.31202 * 119.99796 * 341.38836 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 161.65774 * 11 9 8 14 14 H 1.48506 * 109.47185 * 179.72810 * 13 11 9 15 15 H 1.48495 * 109.47203 * 299.72378 * 13 11 9 16 16 H 1.48504 * 109.47159 * 59.72905 * 13 11 9 17 17 H 1.09001 * 109.47376 * 59.99467 * 1 2 3 18 18 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 19 19 H 1.09005 * 109.46848 * 299.99322 * 1 2 3 20 20 H 1.09005 * 109.46848 * 240.00678 * 2 1 3 21 21 H 1.09001 * 109.47376 * 120.00533 * 2 1 3 22 22 H 0.96990 * 120.00334 * 172.12874 * 7 6 5 23 23 H 0.97004 * 119.99764 * 352.12908 * 7 6 5 24 24 H 0.97002 * 119.99386 * 176.68965 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2921 2.1634 -1.0346 5 8 2.6883 3.2640 -0.7441 6 6 2.7627 3.4670 0.5796 7 7 3.1733 4.6051 1.2214 8 6 2.3301 2.2612 1.1729 9 6 2.2168 1.9402 2.5423 10 1 1.4540 1.2515 2.8743 11 6 3.0907 2.5128 3.4679 12 7 4.2203 3.0430 3.0626 13 14 2.6554 2.5175 5.2844 14 1 3.7436 3.1740 6.0525 15 1 1.3871 3.2626 5.4876 16 1 2.4895 1.1195 5.7573 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8933 -0.5138 -0.8901 21 1 1.8933 -0.5139 0.8899 22 1 3.0790 4.6801 2.1838 23 1 3.5585 5.3362 0.7133 24 1 4.8051 3.4834 3.6989 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020329.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = 22.290791 kcal Electronic energy + Delta-G solvation = -11007.517972 eV Core-core repulsion = 8922.725270 eV Total energy + Delta-G solvation = -2084.792702 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.54851 -36.57347 -35.71423 -34.10452 -31.71337 -30.28901 -27.33650 -24.84692 -22.76634 -20.85265 -18.94466 -17.89938 -17.74513 -17.05428 -16.65548 -15.61906 -14.93624 -14.39160 -14.11523 -13.42255 -13.21529 -12.87390 -12.40827 -12.22443 -12.10108 -11.90835 -11.68001 -11.26181 -10.79378 -10.11861 -8.53200 -8.13920 -5.98061 1.39335 1.44997 1.48288 1.57009 2.07749 2.35994 2.47901 3.25824 3.80457 4.04650 4.39646 4.56781 4.69016 4.81153 5.05082 5.13505 5.34681 5.39764 5.58615 5.69845 6.46798 6.84785 7.09769 7.13733 7.25070 8.27378 8.65940 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.017782 C = 0.013227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.333302 B = 1574.269185 C = 2116.374143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.027 4.027 3 C -0.023 4.023 4 N -0.430 5.430 5 O 0.028 5.972 6 C 0.128 3.872 7 N -0.790 5.790 8 C -0.108 4.108 9 C -0.457 4.457 10 H 0.069 0.931 11 C 0.024 3.976 12 N -0.853 5.853 13 Si 0.971 3.029 14 H -0.276 1.276 15 H -0.266 1.266 16 H -0.270 1.270 17 H 0.045 0.955 18 H 0.087 0.913 19 H 0.045 0.955 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.416 0.584 23 H 0.392 0.608 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -0.270 1.092 3.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.180 4.180 4 N -0.151 5.151 5 O -0.024 6.024 6 C -0.038 4.038 7 N -0.346 5.346 8 C -0.121 4.121 9 C -0.491 4.491 10 H 0.087 0.913 11 C -0.184 4.184 12 N -0.486 5.486 13 Si 0.794 3.206 14 H -0.201 1.201 15 H -0.191 1.191 16 H -0.195 1.195 17 H 0.064 0.936 18 H 0.105 0.895 19 H 0.064 0.936 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.252 0.748 23 H 0.220 0.780 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.127 -0.455 -0.193 3.166 hybrid contribution 0.363 0.490 1.645 1.754 sum -2.765 0.035 1.452 3.123 Atomic orbital electron populations 1.21607 0.93379 1.02677 1.01184 1.19720 0.96864 0.87538 1.02405 1.24898 1.04730 0.98844 0.89546 1.72944 1.23995 0.93620 1.24505 1.84132 1.67523 1.27672 1.23106 1.21145 1.08424 0.91977 0.82205 1.40337 1.71170 1.13697 1.09401 1.19235 1.09465 0.89379 0.94000 1.18340 1.14460 1.26776 0.89555 0.91303 1.26306 0.93072 0.94989 1.04040 1.70096 1.08120 1.32336 1.37999 0.85415 0.78419 0.79032 0.77737 1.20077 1.19080 1.19509 0.93561 0.89450 0.93589 0.90724 0.90561 0.74816 0.78011 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.89 71.98 0.71 -3.65 14 2 C -0.03 -1.08 6.52 29.85 0.19 -0.88 14 3 C -0.02 -1.17 6.84 45.23 0.31 -0.86 14 4 N -0.43 -22.14 11.94 -43.38 -0.52 -22.66 14 5 O 0.03 1.43 11.08 71.28 0.79 2.22 14 6 C 0.13 6.64 8.30 84.62 0.70 7.34 14 7 N -0.79 -34.92 8.08 -165.60 -1.34 -36.25 14 8 C -0.11 -5.92 5.94 -19.46 -0.12 -6.03 14 9 C -0.46 -24.56 9.38 23.30 0.22 -24.34 14 10 H 0.07 3.60 7.90 -2.91 -0.02 3.57 14 11 C 0.02 1.20 4.61 85.11 0.39 1.59 14 12 N -0.85 -43.69 10.59 21.78 0.23 -43.46 14 13 Si 0.97 38.49 29.60 68.60 2.03 40.52 14 14 H -0.28 -10.50 7.11 99.48 0.71 -9.79 14 15 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 16 H -0.27 -10.65 7.11 99.48 0.71 -9.94 14 17 H 0.05 1.55 8.14 -2.39 -0.02 1.53 14 18 H 0.09 2.26 8.14 -2.39 -0.02 2.24 14 19 H 0.04 1.64 8.14 -2.38 -0.02 1.62 14 20 H 0.07 2.71 8.14 -2.38 -0.02 2.69 14 21 H 0.08 3.03 8.14 -2.39 -0.02 3.01 14 22 H 0.42 18.53 6.57 -92.72 -0.61 17.92 14 23 H 0.39 14.46 8.95 -92.70 -0.83 13.63 14 24 H 0.28 13.06 8.31 -92.71 -0.77 12.29 14 Total: -1.00 -60.70 216.53 3.40 -57.30 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.21 Total: 29.19 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 2.41 Total: -26.85 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -1.62 Total: -102.38 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.79 Total: 2.22 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -60.70 3.40 -57.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020329.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.593 kcal (2) G-P(sol) polarization free energy of solvation -60.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds