Wall clock time and date at job start Mon Mar 30 2020 01:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47355 * 2 1 4 4 C 1.50703 * 109.47190 * 240.00161 * 2 1 3 5 5 H 1.07995 * 120.00130 * 239.99979 * 4 2 1 6 6 C 1.37874 * 119.99747 * 59.99976 * 4 2 1 7 7 N 1.31510 * 120.00611 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99966 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46933 * 59.99887 * 8 6 4 10 10 H 1.48494 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46712 * 300.00096 * 8 6 4 12 12 N 1.46502 * 109.46905 * 120.00488 * 2 1 3 13 13 C 1.38165 * 119.99479 * 274.99795 * 12 2 1 14 14 N 1.31048 * 125.71626 * 359.97438 * 13 12 2 15 15 C 1.34727 * 108.60404 * 180.02562 * 14 13 12 16 16 C 1.34086 * 107.79289 * 0.02562 * 15 14 13 17 17 O 1.34214 * 125.70843 * 180.02562 * 13 12 2 18 18 H 1.08997 * 109.47013 * 299.99938 * 1 2 3 19 19 H 1.09000 * 109.46893 * 60.00123 * 1 2 3 20 20 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00521 * 180.02562 * 7 6 4 22 22 H 0.96997 * 120.00213 * 95.00093 * 12 2 1 23 23 H 1.07997 * 126.10214 * 180.02562 * 15 14 13 24 24 H 1.08001 * 126.35818 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0081 9 1 1.8258 -2.5201 -4.0079 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 2.1502 -0.0015 2.3863 14 7 1.8729 1.2659 2.5711 15 6 2.1269 1.5784 3.8568 16 6 2.5708 0.4704 4.4678 17 8 2.5848 -0.5177 3.5465 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7081 1.1609 -3.4844 22 1 2.2490 -1.6319 1.1525 23 1 1.9963 2.5482 4.3137 24 1 2.8623 0.3838 5.5041 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138801.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:54 Heat of formation + Delta-G solvation = 28.171504 kcal Electronic energy + Delta-G solvation = -10707.064425 eV Core-core repulsion = 8622.526729 eV Total energy + Delta-G solvation = -2084.537696 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.36010 -36.01204 -33.77210 -32.68726 -29.49681 -27.43405 -25.25129 -22.15253 -21.51881 -19.90651 -17.83607 -16.35254 -15.93702 -15.18434 -15.04072 -13.97076 -13.36294 -12.50876 -12.47256 -12.06796 -11.28838 -11.06290 -10.84926 -10.53503 -10.32839 -10.24328 -9.59208 -9.38381 -9.02059 -8.49928 -6.94313 -6.15420 -4.24908 2.34565 2.97476 3.25513 3.30490 3.33132 3.62437 4.30144 4.47866 5.17210 5.50183 5.67044 6.06745 6.53462 6.74638 6.83613 7.04214 7.10808 7.44924 7.63857 7.75319 7.91085 8.13851 8.42148 8.70460 8.99128 9.41760 10.90544 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.086374 B = 0.010192 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.093689 B = 2746.670513 C = 2890.548118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.287 3.713 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.667 5.667 13 C 0.470 3.530 14 N -0.551 5.551 15 C -0.005 4.005 16 C -0.153 4.153 17 O -0.244 6.244 18 H 0.017 0.983 19 H 0.093 0.907 20 H 0.027 0.973 21 H 0.266 0.734 22 H 0.402 0.598 23 H 0.172 0.828 24 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -1.652 7.966 8.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.188 3.812 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.312 5.312 13 C 0.171 3.829 14 N -0.292 5.292 15 C -0.143 4.143 16 C -0.224 4.224 17 O -0.133 6.133 18 H 0.037 0.963 19 H 0.111 0.889 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.237 0.763 23 H 0.189 0.811 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.302 -1.031 7.232 7.420 hybrid contribution 0.657 -1.209 -0.110 1.381 sum 1.960 -2.240 7.121 7.718 Atomic orbital electron populations 1.22154 0.98389 0.99282 1.01100 1.18853 0.90926 0.93758 0.77705 0.92884 1.21151 1.32814 1.13518 0.90029 0.91939 1.24855 0.94744 0.94970 0.98971 1.69887 1.35586 1.22333 1.24152 0.86450 0.79177 0.79565 0.81573 1.20113 1.21051 1.20130 1.44638 1.70575 1.12342 1.03631 1.22255 0.91588 0.86684 0.82384 1.71001 1.30744 1.10217 1.17233 1.23055 1.01253 0.99608 0.90403 1.24154 1.16048 0.87226 0.95020 1.84382 1.69769 1.40303 1.18885 0.96349 0.88873 0.95426 0.92388 0.76256 0.81069 0.78183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.27 37.16 0.34 -3.39 14 2 C 0.29 7.33 2.71 -69.08 -0.19 7.14 14 3 H 0.05 1.53 7.79 -51.93 -0.40 1.12 14 4 C -0.54 -14.24 8.73 -34.44 -0.30 -14.54 14 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 14 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 14 7 N -0.88 -24.57 11.32 55.43 0.63 -23.95 14 8 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 14 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 14 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 14 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 14 12 N -0.67 -14.78 5.20 -56.91 -0.30 -15.08 14 13 C 0.47 10.19 9.02 -86.99 -0.78 9.41 14 14 N -0.55 -12.20 10.71 -14.45 -0.15 -12.35 14 15 C 0.00 -0.08 11.88 -17.74 -0.21 -0.29 14 16 C -0.15 -2.41 12.16 29.27 0.36 -2.05 14 17 O -0.24 -4.67 10.80 3.69 0.04 -4.63 14 18 H 0.02 0.43 8.14 -51.93 -0.42 0.01 14 19 H 0.09 2.49 6.07 -51.93 -0.32 2.17 14 20 H 0.03 0.64 8.14 -51.93 -0.42 0.22 14 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 22 H 0.40 7.97 8.66 -40.82 -0.35 7.62 14 23 H 0.17 2.31 8.06 -52.49 -0.42 1.89 14 24 H 0.20 2.16 8.06 -52.49 -0.42 1.74 14 LS Contribution 218.93 15.07 3.30 3.30 Total: -1.00 -29.45 218.93 -4.69 -34.14 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -2.31 Total: 5.02 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.88 Total: -1.99 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.18 Total: -51.38 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.04 Total: -4.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.45 -4.69 -34.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138801.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.310 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds